Huang Mei-Juan, Fei Jing-Jing, Salam Nimaichand, Kim Chang-Jin, Hozzein Wael N, Xiao Min, Huang Hai-Quan, Li Wen-Jun
Yunnan Institute of Microbiology, Yunnan University, Kunming, 650091, China.
College of Landscape Architecture, Southwest Forestry University, Kunming, 650224, China.
Arch Microbiol. 2016 Oct;198(8):743-9. doi: 10.1007/s00203-016-1233-5. Epub 2016 May 12.
An actinomycete strain, designated YIM T102(T), was isolated from the rhizospheric soil of Psammosilene tunicoides W. C. Wu et C. Y. Wu collected from Lijiang, Yunnan Province, China. The taxonomic position of the new isolate was investigated by a polyphasic approach. Phylogenetic analyses based on 16S rRNA gene sequences indicated that strain YIM T102(T) belongs to the genus Streptomyces. Strain YIM T102(T) was most closely related to Streptomyces eurocidicus NRRL B-1676(T) with a pairwise 16S rRNA gene sequence similarity of 98.9 %. However, DNA-DNA relatedness value between strain YIM T102(T) and S. eurocidicus NBRC 13491(T) was found to be 37.8 ± 1.8 %. The menaquinone composition detected for strain YIM T102(T) was MK-9 (H6) and MK-9 (H8), while the major fatty acids were summed feature 4 (38.0 %), anteiso-C15:0 (13.1 %), iso-C16:0 (10.1 %), summed feature 3 (9.8 %) and C16:0 (9.0 %) and iso-C15:0 (5.2 %). The whole-cell hydrolysates contained galactose, glucose, ribose and mannose, along with LL-diaminopimelic acid as the diagnostic diamino acid in the peptidoglycan. The DNA G+C content was 70.7 mol%. Strain YIM T102(T) also exhibited antagonistic activity against Alternaria alternata, Alternaria brassicae and Colletotrichum nicotianae Averna, based on the findings from the comparative analyses of phenotypic and genotypic characteristics; it is proposed that strain YIM T102 represents a novel species of the genus Streptomyces, for which the name Streptomyces zhihengii sp. nov. is proposed. The type strain is YIM T102(T) (=KCTC 39115(T) = DSM 42176(T) = CGMCC 4.7248(T)).
从中国云南省丽江市采集的金铁锁(Psammosilene tunicoides W. C. Wu et C. Y. Wu)根际土壤中分离出一株放线菌,命名为YIM T102(T)。采用多相分类方法研究了该新分离株的分类地位。基于16S rRNA基因序列的系统发育分析表明,菌株YIM T102(T)属于链霉菌属。菌株YIM T102(T)与欧洲杀线虫链霉菌(Streptomyces eurocidicus)NRRL B-1676(T)关系最为密切,16S rRNA基因序列两两相似性为98.9%。然而,菌株YIM T102(T)与欧洲杀线虫链霉菌NBRC 13491(T)的DNA-DNA杂交值为37.8±1.8%。检测到菌株YIM T102(T)的甲基萘醌组成为MK-9(H6)和MK-9(H8),主要脂肪酸为特征性总和4(38.0%)、anteiso-C15:0(13.1%)、iso-C16:0(10.1%)、特征性总和3(9.8%)、C16:0(9.0%)和iso-C15:0(5.2%)。全细胞水解产物含有半乳糖、葡萄糖、核糖和甘露糖,肽聚糖中的诊断性二氨基酸为LL-二氨基庚二酸。DNA G+C含量为70.7 mol%。基于表型和基因型特征的比较分析结果,菌株YIM T102(T)对链格孢(Alternaria alternata)、芸苔链格孢(Alternaria brassicae)和烟草炭疽菌(Colletotrichum nicotianae Averna)也表现出拮抗活性;建议将菌株YIM T102代表链霉菌属的一个新物种,命名为志恒链霉菌(Streptomyces zhihengii)新种。模式菌株为YIM T102(T)(=KCTC 39115(T)=DSM 42176(T)=CGMCC 4.7248(T))。