Choudhury R A, Koike S T, Fox A D, Anchieta A, Subbarao K V, Klosterman S J, McRoberts N
First, fifth, and seventh authors: Department of Plant Pathology, University of California, Davis 95616; second author: University of California Cooperative Extension, 1432 Abbott St., Salinas 93901; third author: Fox Weather, LLC, Fortuna, 95540; and fourth and sixth authors: United States Department of Agriculture-Agricultural Research Service, 1636 E. Alisal St., Salinas, CA 93905.
Phytopathology. 2017 Jan;107(1):50-58. doi: 10.1094/PHYTO-04-16-0162-R. Epub 2016 Oct 14.
Downy mildew is the most devastating disease threatening sustainable spinach production, particularly in the organic sector. The disease is caused by the biotrophic oomycete pathogen Peronospora effusa, and the disease results in yellow lesions that render the crop unmarketable. In this study, the levels of DNA from airborne spores of P. effusa were assessed near a field of susceptible plants in Salinas, CA during the winter months of 2013-14 and 2014/15 using rotating-arm impaction spore-trap samplers that were assessed with a species-specific quantitative polymerase chain reaction (qPCR) assay. Low levels of P. effusa DNA were detectable from December through February in both winters but increased during January in both years, in correlation with observed disease incidence; sharp peaks in P. effusa DNA detection were associated with the onset of disease incidence. The incidence of downy mildew in the susceptible field displayed logistic-like dynamics but with considerable interseason variation. Analysis of the area under the disease progress curves suggested that the 2013-14 epidemic was significantly more severe than the 2014-15 epidemic. Spatial analyses indicated that disease incidence was dependent within an average range of 5.6 m, approximately equivalent to the width of three planted beds in a typical production field. The spatial distribution of spores captured during an active epidemic most closely fit a power-law distribution but could also be fit with an exponential distribution. These studies revealed two important results in the epidemiology of spinach downy mildew in California. First, they demonstrated the potential of impaction spore-trap samplers linked with a qPCR assay for indicating periods of high disease risk, as well as the detection of long-distance dispersal of P. effusa spores. Second, at the scale of individual crops, a high degree of spatial aggregation in disease incidence was revealed.
霜霉病是威胁菠菜可持续生产的最具破坏性的病害,尤其是在有机种植领域。该病由活体营养型卵菌病原体菠菜霜霉引起,患病后会出现黄色病斑,导致作物无法进入市场。在本研究中,2013 - 14年和2014/15年冬季,在加利福尼亚州萨利纳斯一片种植易感植株的田地附近,使用旋转臂撞击式孢子捕捉器采集空气传播的菠菜霜霉孢子,通过物种特异性定量聚合酶链反应(qPCR)测定法评估其DNA水平。在这两个冬季,12月至2月均可检测到低水平的菠菜霜霉DNA,但在这两年的1月均有所增加,与观察到的发病率相关;菠菜霜霉DNA检测的高峰与发病的开始有关。易感田地中霜霉病的发病率呈现类似逻辑斯蒂的动态变化,但季节间差异较大。对病害进展曲线下面积的分析表明,2013 - 14年的疫情比2014 - 15年的疫情严重得多。空间分析表明,病害发病率在平均5.6米的范围内具有依赖性分布,这大约相当于典型生产田地中三个种植床的宽度。在疫情活跃期捕获的孢子的空间分布最符合幂律分布,但也可以用指数分布拟合。这些研究揭示了加利福尼亚州菠菜霜霉病流行病学的两个重要结果。第一,它们证明了与qPCR测定法相结合的撞击式孢子捕捉器在指示高病害风险期以及检测菠菜霜霉孢子远距离传播方面的潜力。第二,在单个作物的尺度上,揭示了病害发病率的高度空间聚集性。