The Thomas N. Sato BioMEC-X Laboratories, Advanced Telecommunications Research Institute International (ATR), Kyoto, Japan.
ERATO Sato Live Bio-Forecasting Project, Japan Science and Technology Agency (JST), Kyoto, Japan.
Sci Rep. 2016 Sep 6;6:32962. doi: 10.1038/srep32962.
Combination of live-imaging and live-manipulation of developing embryos in vivo provides a useful tool to study developmental processes. Identification and selection of target cells for an in vivo live-manipulation are generally performed by experience- and knowledge-based decision-making of the observer. Computer-assisted live-prediction method would be an additional approach to facilitate the identification and selection of the appropriate target cells. Herein we report such a method using developing zebrafish embryos. We choose V2 neural progenitor cells in developing zebrafish embryo as their successive shape changes can be visualized in real-time in vivo. We developed a relatively simple mathematical method of describing cellular geometry of V2 cells to predict cell division-timing based on their successively changing shapes in vivo. Using quantitatively measured 4D live-imaging data, features of V2 cell-shape at each time point prior to division were extracted and a statistical model capturing the successive changes of the V2 cell-shape was developed. By applying sequential Bayesian inference method to the model, we successfully predicted division-timing of randomly selected individual V2 cells while the cell behavior was being live-imaged. This system could assist pre-selecting target cells desirable for real-time manipulation-thus, presenting a new opportunity for in vivo experimental systems.
在体实时成像和操作发育中胚胎结合提供了研究发育过程的有用工具。在体实时操作中目标细胞的识别和选择通常是基于观察者的经验和知识决策。计算机辅助实时预测方法将是一种额外的方法,可以方便地识别和选择合适的目标细胞。本文报告了一种使用发育中的斑马鱼胚胎的方法。我们选择发育中的斑马鱼胚胎中的 V2 神经前体细胞作为研究对象,因为它们的连续形状变化可以在体内实时可视化。我们开发了一种相对简单的数学方法来描述 V2 细胞的细胞几何形状,以便根据其在体内连续变化的形状来预测细胞分裂时间。使用定量测量的 4D 活体成像数据,提取 V2 细胞在分裂前每个时间点的形状特征,并建立了一个捕获 V2 细胞形状连续变化的统计模型。通过将序贯贝叶斯推断方法应用于该模型,我们成功地预测了随机选择的单个 V2 细胞的分裂时间,同时对细胞行为进行实时成像。该系统可以辅助预选择用于实时操作的目标细胞,从而为体内实验系统提供了新的机会。