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关于在从核磁共振实验获得的³ -耦合值推导生物分子结构时使用时间平均约束。

On the use of time-averaging restraints when deriving biomolecular structure from ³ -coupling values obtained from NMR experiments.

作者信息

Smith Lorna J, van Gunsteren Wilfred F, Hansen Niels

机构信息

Inorganic Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford, OX1 3QR, UK.

Laboratory of Physical Chemistry, Swiss Federal Institute of Technology, ETH, 8093, Zurich, Switzerland.

出版信息

J Biomol NMR. 2016 Sep;66(1):69-83. doi: 10.1007/s10858-016-0058-5. Epub 2016 Sep 15.

Abstract

Deriving molecular structure from [Formula: see text]-couplings obtained from NMR experiments is a challenge due to (1) the uncertainty in the Karplus relation [Formula: see text] connecting a [Formula: see text]-coupling value to a torsional angle [Formula: see text], (2) the need to account for the averaging inherent to the measurement of [Formula: see text]-couplings, and (3) the sampling road blocks that may emerge due to the multiple-valuedness of the inverse function [Formula: see text] of the function [Formula: see text]. Ways to properly handle these issues in structure refinement of biomolecules are discussed and illustrated using the protein hen egg white lysozyme as example.

摘要

从核磁共振实验获得的[公式:见正文]耦合中推导分子结构是一项挑战,原因如下:(1) Karplus关系[公式:见正文](将[公式:见正文]耦合值与扭转角[公式:见正文]联系起来)存在不确定性;(2) 需要考虑[公式:见正文]耦合测量中固有的平均化;(3) 由于函数[公式:见正文]的反函数[公式:见正文]的多值性可能出现的采样障碍。本文讨论了在生物分子结构优化中妥善处理这些问题的方法,并以鸡蛋清溶菌酶为例进行了说明。

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