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巴尔贾伊弧菌新种,一种从贝类孵化场分离出的地中海分支新物种。

Vibrio barjaei sp. nov., a new species of the Mediterranei clade isolated in a shellfish hatchery.

作者信息

Dubert Javier, Balboa Sabela, Regueira María, González-Castillo Adrián, Gómez-Gil Bruno, Romalde Jesús L

机构信息

Departamento de Microbiología y Parasitología, CIBUS-Facultad de Biología, Universidade de Santiago de Compostela, Santiago de Compostela 15782, Spain.

CIAD, A.C., Mazatlán Unit for Aquaculture, Mazatlán 82000, Mexico.

出版信息

Syst Appl Microbiol. 2016 Dec;39(8):553-556. doi: 10.1016/j.syapm.2016.09.001. Epub 2016 Sep 20.

Abstract

Seven isolates were obtained from different culture stages of carpet shell clam (Ruditapes decussatus) reared in a bivalve hatchery (Galicia, NW Spain). Three groups were differentiated by genotyping techniques and phenotypic profiles and representative trains were selected to further taxonomic studies. These strains were studied by a polyphasic approach and in basis of the phylogenetic analysis based on concatenated sequences of the five housekeeping genes ftsZ, gyrB, pyrH, recA and rpoA formed a tight group into the Mediterranei clade of the genus Vibrio. Percentages of genomic resemblance, including average nucleotide identity, in silico genome-to-genome comparison and wet DNA-DNA hybridization between the type strain and the closest relatives Vibrio mediterranei and Vibrio thalassae were below of the proposed boundaries for the definition of species. The novel isolates could be also differentiated from the related taxa on the basis of several phenotypic traits and fatty acid profiles. Results obtained support the description of a novel species into the Mediterranei clade, for which the name Vibrio barjaei sp. nov. is proposed, with strain 3062 (=CECT 9090=CAIM 1921T=LMG 29358) as the type strain.

摘要

从西班牙西北部加利西亚的一个双壳贝类孵化场养殖的四角蛤蜊(Ruditapes decussatus)的不同培养阶段获得了七株分离株。通过基因分型技术和表型特征区分出三组,并选择代表性菌株进行进一步的分类学研究。采用多相方法对这些菌株进行研究,基于五个管家基因ftsZ、gyrB、pyrH、recA和rpoA的串联序列进行系统发育分析,结果表明这些菌株在弧菌属的地中海分支中形成了一个紧密的群体。模式菌株与最亲近的亲缘种地中海弧菌(Vibrio mediterranei)和海洋弧菌(Vibrio thalassae)之间的基因组相似性百分比,包括平均核苷酸同一性、计算机模拟基因组到基因组比较以及湿DNA-DNA杂交,均低于物种定义所提议的界限。这些新分离株还可以根据几个表型特征和脂肪酸谱与相关分类群区分开来。所获得的结果支持在地中海分支中描述一个新物种,为此提议将其命名为巴氏弧菌(Vibrio barjaei sp. nov.),模式菌株为3062(=CECT 9090=CAIM 1921T=LMG 29358)。

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