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波兰粪肠球菌VanA菌株中质粒和Tn1546型转座子的多样性

Diversity of plasmids and Tn1546-type transposons among VanA Enterococcus faecium in Poland.

作者信息

Wardal E, Kuch A, Gawryszewska I, Żabicka D, Hryniewicz W, Sadowy E

机构信息

Department of Molecular Microbiology, National Medicines Institute, Chełmska 30/34, 00-725, Warsaw, Poland.

Department of Epidemiology and Clinical Microbiology, National Medicines Institute, Chełmska 30/34, 00-725, Warsaw, Poland.

出版信息

Eur J Clin Microbiol Infect Dis. 2017 Feb;36(2):313-328. doi: 10.1007/s10096-016-2804-8. Epub 2016 Oct 17.

Abstract

The objective of this study was to investigate the antimicrobial resistance, Tn1546 transposon variability and plasmid diversity among Polish vancomycin-resistant Enterococcus faecium (VREfm) isolates of VanA phenotype in the context of their clonal structure. Two hundred sixteen clinical VREfm isolates collected between 1997 and 2010 were studied by antimicrobial susceptibility testing, MLST, MLVA and detection of IS16, esp , pilA, intA and plasmid-specific genes by PCR. Tn1546 structure was revealed by overlapping PCR and sequencing. Selected isolates were subjected to PFGE-S1 and Southern hybridization analyses. The vast majority of the isolates (95.8 %) belonged to lineages 17/18 (during the whole study period 1997-2010) and 78 (mostly in 2006-2010) of hospital-adapted meroclone of E. faecium. All isolates displayed a multi-drug resistance phenotype. Twenty-eight Tn1546 types (including 26 novel ones) were associated with eight different ISs (IS1216, IS1251, ISEfa4, ISEfa5, ISEfm2, ISEf1, IS3-like, ISEfm1-like). The vanA-determinant was typically located on plasmids, which most commonly carried rep2, rep17, rep18, rep1, ω-ε-ζ and axe-txe genes. VanA isolates from 1997-2005 to 2006-2010 differed in clonal composition, prevalence of gentamicin- and tetracycline-resistance and plasmidome. Our analysis revealed high complexity of Tn1546-type transposons and vanA-plasmids, and suggested that diverse genetic events, such as conjugation transfer, recombination, chromosomal integration and DNA mutations shaped the structure of these elements among Polish VREfm.

摘要

本研究的目的是在波兰具有VanA表型的耐万古霉素屎肠球菌(VREfm)分离株的克隆结构背景下,研究其抗菌药物耐药性、Tn1546转座子变异性和质粒多样性。通过抗菌药物敏感性试验、多位点序列分型(MLST)、多位点可变数目串联重复序列分析(MLVA)以及采用聚合酶链反应(PCR)检测IS16、esp、pilA、intA和质粒特异性基因,对1997年至2010年间收集的216株临床VREfm分离株进行了研究。通过重叠PCR和测序揭示了Tn1546结构。对选定的分离株进行了脉冲场凝胶电泳-S1(PFGE-S1)和Southern杂交分析。绝大多数分离株(95.8%)属于屎肠球菌医院适应性半克隆的17/18谱系(在1997 - 2010年整个研究期间)和78谱系(主要在2006 - 2010年)。所有分离株均表现出多重耐药表型。28种Tn1546类型(包括26种新类型)与8种不同的插入序列(IS1216、IS1251、ISEfa4、ISEfa5、ISEfm2、ISEf1、IS3样、ISEfm1样)相关。vanA决定簇通常位于质粒上,这些质粒最常携带rep2、rep17、rep18、rep1、ω-ε-ζ和axe-txe基因。1997 - 2005年至2006 - 2010年的VanA分离株在克隆组成、庆大霉素和四环素耐药性流行率以及质粒组方面存在差异。我们的分析揭示了Tn1546型转座子和vanA质粒的高度复杂性,并表明不同的遗传事件,如接合转移、重组、染色体整合和DNA突变塑造了波兰VREfm中这些元件的结构。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d4b/5253160/9dd89a3df01f/10096_2016_2804_Fig1a_HTML.jpg

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