McKenna Duane D, Scully Erin D, Pauchet Yannick, Hoover Kelli, Kirsch Roy, Geib Scott M, Mitchell Robert F, Waterhouse Robert M, Ahn Seung-Joon, Arsala Deanna, Benoit Joshua B, Blackmon Heath, Bledsoe Tiffany, Bowsher Julia H, Busch André, Calla Bernarda, Chao Hsu, Childers Anna K, Childers Christopher, Clarke Dave J, Cohen Lorna, Demuth Jeffery P, Dinh Huyen, Doddapaneni HarshaVardhan, Dolan Amanda, Duan Jian J, Dugan Shannon, Friedrich Markus, Glastad Karl M, Goodisman Michael A D, Haddad Stephanie, Han Yi, Hughes Daniel S T, Ioannidis Panagiotis, Johnston J Spencer, Jones Jeffery W, Kuhn Leslie A, Lance David R, Lee Chien-Yueh, Lee Sandra L, Lin Han, Lynch Jeremy A, Moczek Armin P, Murali Shwetha C, Muzny Donna M, Nelson David R, Palli Subba R, Panfilio Kristen A, Pers Dan, Poelchau Monica F, Quan Honghu, Qu Jiaxin, Ray Ann M, Rinehart Joseph P, Robertson Hugh M, Roehrdanz Richard, Rosendale Andrew J, Shin Seunggwan, Silva Christian, Torson Alex S, Jentzsch Iris M Vargas, Werren John H, Worley Kim C, Yocum George, Zdobnov Evgeny M, Gibbs Richard A, Richards Stephen
Department of Biological Sciences, University of Memphis, 3700 Walker Ave., Memphis, TN, 38152, USA.
Feinstone Center for Genomic Research, University of Memphis, Memphis, TN, 38152, USA.
Genome Biol. 2016 Nov 11;17(1):227. doi: 10.1186/s13059-016-1088-8.
Relatively little is known about the genomic basis and evolution of wood-feeding in beetles. We undertook genome sequencing and annotation, gene expression assays, studies of plant cell wall degrading enzymes, and other functional and comparative studies of the Asian longhorned beetle, Anoplophora glabripennis, a globally significant invasive species capable of inflicting severe feeding damage on many important tree species. Complementary studies of genes encoding enzymes involved in digestion of woody plant tissues or detoxification of plant allelochemicals were undertaken with the genomes of 14 additional insects, including the newly sequenced emerald ash borer and bull-headed dung beetle.
The Asian longhorned beetle genome encodes a uniquely diverse arsenal of enzymes that can degrade the main polysaccharide networks in plant cell walls, detoxify plant allelochemicals, and otherwise facilitate feeding on woody plants. It has the metabolic plasticity needed to feed on diverse plant species, contributing to its highly invasive nature. Large expansions of chemosensory genes involved in the reception of pheromones and plant kairomones are consistent with the complexity of chemical cues it uses to find host plants and mates.
Amplification and functional divergence of genes associated with specialized feeding on plants, including genes originally obtained via horizontal gene transfer from fungi and bacteria, contributed to the addition, expansion, and enhancement of the metabolic repertoire of the Asian longhorned beetle, certain other phytophagous beetles, and to a lesser degree, other phytophagous insects. Our results thus begin to establish a genomic basis for the evolutionary success of beetles on plants.
关于甲虫取食木材的基因组基础和进化,我们了解得相对较少。我们对亚洲长角天牛(Anoplophora glabripennis)进行了基因组测序和注释、基因表达分析、植物细胞壁降解酶研究以及其他功能和比较研究。亚洲长角天牛是一种具有全球重要性的入侵物种,能够对许多重要树种造成严重的取食损害。我们还利用另外14种昆虫的基因组,对编码参与木质植物组织消化或植物化感物质解毒的酶的基因进行了补充研究,其中包括新测序的光肩星天牛和牛头嗡蜣螂。
亚洲长角天牛的基因组编码了一系列独特多样的酶,这些酶能够降解植物细胞壁中的主要多糖网络、使植物化感物质解毒,并以其他方式促进对木质植物的取食。它具有取食多种植物物种所需的代谢可塑性,这有助于其高度的入侵性。参与信息素和植物利它素接收的化学感应基因的大量扩增,与它用于寻找寄主植物和配偶的化学信号的复杂性相一致。
与专门取食植物相关的基因的扩增和功能分化,包括最初通过水平基因转移从真菌和细菌获得的基因,促成了亚洲长角天牛、某些其他植食性甲虫以及在较小程度上其他植食性昆虫代谢库的增加、扩展和增强。因此,我们的研究结果开始为甲虫在植物上进化成功建立了基因组基础。