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基部被子植物中富含亮氨酸重复序列的类受体蛋白激酶()基因的复制与分化

Duplication and Divergence of Leucine-Rich Repeat Receptor-Like Protein Kinase () Genes in Basal Angiosperm .

作者信息

Liu Ping-Li, Xie Lu-Lu, Li Peng-Wei, Mao Jian-Feng, Liu Hui, Gao Shu-Min, Shi Peng-Hao, Gong Jun-Qing

机构信息

College of Biological Sciences and Biotechnology, Beijing Forestry University Beijing, China.

Department of Chinese Cabbage, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences Beijing, China.

出版信息

Front Plant Sci. 2016 Dec 23;7:1952. doi: 10.3389/fpls.2016.01952. eCollection 2016.

Abstract

Leucine-rich repeat receptor-like protein kinases (LRR-RLKs) are the largest group of receptor-like kinases, which are one of the largest protein superfamilies in plants, and play crucial roles in development and stress responses. Although the evolution of families has been investigated in some eudicot and monocot plants, no comprehensive evolutionary studies have been performed for these genes in basal angiosperms like . In this study, we identified 94 genes in the genome of . The number of genes in the genome of is only 17-50% of that of several eudicot and monocot species. Tandem duplication and whole-genome duplication have made limited contributions to the expansion of genes in . According to the phylogenetic analysis, all genes can be organized into 18 subfamilies, which roughly correspond to the subfamilies defined in . Most subfamilies are characterized by highly conserved protein structures, motif compositions, and gene structures. The unique gene structure, protein structures, and protein motif compositions of each subfamily provide evidence for functional divergence among LRR-RLK subfamilies. Moreover, the expression data of genes provided further evidence for the functional diversification of them. In addition, selection analyses showed that most LRR-RLK protein sites are subject to purifying selection. Our results contribute to a better understanding of the evolution of LRR-RLK gene family in angiosperm and provide a framework for further functional investigation on LRR-RLKs.

摘要

富含亮氨酸重复序列的类受体蛋白激酶(LRR-RLKs)是最大的类受体激酶家族,而类受体激酶是植物中最大的蛋白质超家族之一,在植物发育和胁迫响应中发挥着关键作用。尽管已经在一些双子叶植物和单子叶植物中研究了这些家族的进化,但尚未对像[此处原文缺失相关植物名称]这样的基部被子植物中的这些基因进行全面的进化研究。在本研究中,我们在[此处原文缺失相关植物名称]的基因组中鉴定出94个[此处原文缺失相关基因名称]基因。[此处原文缺失相关植物名称]基因组中的[此处原文缺失相关基因名称]基因数量仅为几种双子叶植物和单子叶植物的17%-50%。串联重复和全基因组重复对[此处原文缺失相关植物名称]中[此处原文缺失相关基因名称]基因的扩增贡献有限。根据系统发育分析,所有[此处原文缺失相关基因名称]基因可分为18个亚家族,这大致对应于[此处原文缺失相关参考文献]中定义的[此处原文缺失相关亚家族名称]亚家族。大多数[此处原文缺失相关亚家族名称]亚家族的特征是具有高度保守的蛋白质结构、基序组成和基因结构。每个亚家族独特的基因结构、蛋白质结构和蛋白质基序组成为LRR-RLK亚家族之间的功能分化提供了证据。此外,[此处原文缺失相关基因名称]基因的表达数据为它们的功能多样化提供了进一步的证据。此外,选择分析表明,大多数LRR-RLK蛋白质位点受到纯化选择。我们的结果有助于更好地理解被子植物中LRR-RLK基因家族的进化,并为进一步研究[此处原文缺失相关LRR-RLKs名称]的功能提供了框架。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3da/5179525/fdce71954afa/fpls-07-01952-g0001.jpg

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