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胃癌患者中下调的微小RNA谱分析

A Downmodulated MicroRNA Profiling in Patients with Gastric Cancer.

作者信息

Zhang Tao, Liu Chang, Huang Shi, Ma Yuanping, Fang Jiansong, Chen Yuanneng

机构信息

Department of Gastroenterology, Ruikang Hospital, Guangxi Traditional Chinese Medical University, Nanning, Guangxi 530011, China.

出版信息

Gastroenterol Res Pract. 2017;2017:1526981. doi: 10.1155/2017/1526981. Epub 2017 May 4.

Abstract

. Here, we aim to investigate the microRNA (miR) profiling in human gastric cancer (GC). . Tumoral and matched peritumoral gastric specimens were collected from 12 GC patients who underwent routine surgery. A high-throughput miR sequencing method was applied to detect the aberrantly expressed miRs in a subset of 6 paired samples. The stem-loop quantitative real-time polymerase chain reaction (qRT-PCR) assay was subsequently performed to confirm the sequencing results in the remaining 6 paired samples. The profiling results were also validated in vitro in three human GC cell lines (BGC-823, MGC-803, and GTL-16) and a normal gastric epithelial cell line (GES-1). . The miR sequencing approach detected 5 differentially expressed miRs, hsa-miR-132-3p, hsa-miR-155-5p, hsa-miR-19b-3p, hsa-miR-204-5p, and hsa-miR-30a-3p, which were significantly downmodulated between the tumoral and peritumoral GC tissues. Most of the results were further confirmed by qRT-PCR, while no change was observed for hsa-miR-30a-3p. The in vitro finding also agreed with the results of both miR sequencing and qRT-PCR for hsa-miR-204-5p, hsa-miR-155-5p, and hsa-miR-132-3p. . Together, our findings may serve to identify new molecular alterations as well as to enrich the miR profiling in human GC.

摘要

在此,我们旨在研究人类胃癌(GC)中的微小RNA(miR)谱。从12例行常规手术的GC患者中收集肿瘤及配对的癌旁胃组织标本。应用高通量miR测序方法检测6对样本子集中异常表达的miR。随后进行茎环定量实时聚合酶链反应(qRT-PCR)检测,以确认其余6对样本的测序结果。还在三种人类GC细胞系(BGC-823、MGC-803和GTL-16)和一种正常胃上皮细胞系(GES-1)中对谱分析结果进行了体外验证。miR测序方法检测到5种差异表达的miR,即hsa-miR-132-3p、hsa-miR-155-5p、hsa-miR-19b-3p、hsa-miR-204-5p和hsa-miR-30a-3p,它们在肿瘤和癌旁GC组织之间显著下调。大多数结果通过qRT-PCR进一步得到证实,而hsa-miR-30a-3p未观察到变化。体外研究结果也与hsa-miR-204-5p、hsa-miR-155-5p和hsa-miR-132-3p的miR测序及qRT-PCR结果一致。总之,我们的研究结果可能有助于识别新的分子改变,并丰富人类GC中的miR谱。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d50c/5436063/7b6aeb5f73d3/GRP2017-1526981.001.jpg

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