Barbosa Nathalia S V, Zhang Yong, Lima Eduardo R A, Tavares Frederico W, Maginn Edward J
Programa de Pós-graduação em Engenharia Química, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, RJ, 20550-013, Brazil.
Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, IN, 46556, USA.
J Mol Model. 2017 Jun;23(6):194. doi: 10.1007/s00894-017-3355-3. Epub 2017 May 26.
An all-atom force field consistent with the general AMBER force field (GAFF) format for poly(ethylene glycol) dimethyl ether (diglyme or G2) was developed by fitting to experimental liquid densities and dielectric constants. Not surprisingly, the new force field gives excellent agreement with experimental liquid phase densities and dielectric constants over a wide temperature range. Other dynamic and thermodynamic properties of liquid G2 such as its self-diffusion coefficient, shear viscosity, and vaporization enthalpy were also calculated and compared to experimental data. For all of the properties studied, the performance of the proposed new force field is better than that of the standard GAFF force field. The force field parameters were transferred to model two other poly(ethylene glycol) ethers: monoglyme (G1) and tetraglyme (G4). The predictive ability of the modified force field for G1 and G4 was significantly better than that of the original GAFF force field. The proposed force field provides an alternative option for the simulation of mixtures containing glymes using GAFF-compatible force fields, particularly for electrochemical applications. The accuracy of a previously published force field based on the OPLS-AA format and the accuracies of two modified versions of that force field were also examined for G1, G2, and G4. It was found that the original OPLS-AA force field is superior to the modified versions of it, and that it has a similar accuracy to the proposed new GAFF-compatible force field. Graphical abstract Transferability of an AMBER-compatible force field parameterized for G2 to other glymes.
通过拟合实验液体密度和介电常数,开发了一种与聚乙二醇二甲醚(二甘醇二甲醚或G2)的通用AMBER力场(GAFF)格式一致的全原子力场。不出所料,新的力场在很宽的温度范围内与实验液相密度和介电常数具有极好的一致性。还计算了液体G2的其他动力学和热力学性质,如自扩散系数、剪切粘度和汽化焓,并与实验数据进行了比较。对于所有研究的性质,所提出的新力场的性能优于标准GAFF力场。将力场参数转移到另外两种聚乙二醇醚的模型中:单甘醇二甲醚(G1)和四甘醇二甲醚(G4)。修改后的力场对G1和G4的预测能力明显优于原始GAFF力场。所提出的力场为使用与GAFF兼容的力场模拟含有甘醇二甲醚的混合物提供了一种替代选择,特别是对于电化学应用。还针对G1、G2和G4检验了基于OPLS - AA格式的先前发表的力场的准确性以及该力场的两个修改版本的准确性。发现原始的OPLS - AA力场优于其修改版本,并且其准确性与所提出的新的与GAFF兼容的力场相似。图形摘要:为G2参数化的与AMBER兼容的力场对其他甘醇二甲醚的可转移性。