断点勘探者：一种用于结构变异可视化的管道。
BreakPoint Surveyor: a pipeline for structural variant visualization.
机构信息
Oncology Division, Department of Medicine.
McDonnell Genome Institute.
出版信息
Bioinformatics. 2017 Oct 1;33(19):3121-3122. doi: 10.1093/bioinformatics/btx362.
SUMMARY
BreakPoint Surveyor (BPS) is a computational pipeline for the discovery, characterization, and visualization of complex genomic rearrangements, such as viral genome integration, in paired-end sequence data. BPS facilitates interpretation of structural variants by merging structural variant breakpoint predictions, gene exon structure, read depth, and RNA-sequencing expression into a single comprehensive figure.
AVAILABILITY AND IMPLEMENTATION
Source code and sample data freely available for download at https://github.com/ding-lab/BreakPointSurveyor, distributed under the GNU GPLv3 license, implemented in R, Python and BASH scripts, and supported on Unix/Linux/OS X operating systems.
CONTACT
SUPPLEMENTARY INFORMATION
Supplementary data are available at Bioinformatics online.
摘要
断点调查员（BPS）是一个用于在配对末端序列数据中发现、描述和可视化复杂基因组重排（如病毒基因组整合）的计算管道。BPS 通过将结构变异断点预测、基因外显子结构、读深度和 RNA 测序表达合并到单个综合图中，有助于解释结构变异。
可用性和实现
源代码和示例数据可在 https://github.com/ding-lab/BreakPointSurveyor 上免费下载，根据 GNU GPLv3 许可证分发，用 R、Python 和 BASH 脚本实现，可在 Unix/Linux/OS X 操作系统上运行。
联系人
补充信息
补充数据可在生物信息学在线获得。
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