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An engineering design approach to systems biology.
Integr Biol (Camb). 2017 Jul 17;9(7):574-583. doi: 10.1039/c7ib00014f.
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Bottom-Up Biology: Harnessing Engineering to Understand Nature.
Dev Cell. 2016 Sep 26;38(6):587-9. doi: 10.1016/j.devcel.2016.09.009.
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Some new directions in control theory inspired by systems biology.
Syst Biol (Stevenage). 2004 Jun;1(1):9-18. doi: 10.1049/sb:20045006.
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Synthetic biology through biomolecular design and engineering.
Curr Opin Struct Biol. 2008 Aug;18(4):491-8. doi: 10.1016/j.sbi.2008.06.006. Epub 2008 Aug 5.
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Systems interface biology.
J R Soc Interface. 2006 Oct 22;3(10):603-16. doi: 10.1098/rsif.2006.0143.
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A perspective of synthetic biology: assembling building blocks for novel functions.
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Biomedical engineering strategies in system design space.
Ann Biomed Eng. 2011 Apr;39(4):1278-95. doi: 10.1007/s10439-010-0220-2. Epub 2011 Jan 4.
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Bioengineering and systems biology.
Ann Biomed Eng. 2006 Feb;34(2):257-64. doi: 10.1007/s10439-005-9047-7.
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Bridging the gaps in systems biology.
Mol Genet Genomics. 2014 Oct;289(5):727-34. doi: 10.1007/s00438-014-0843-3. Epub 2014 Apr 13.

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Unravelling the impact of SARS-CoV-2 on hemostatic and complement systems: a systems immunology perspective.
Front Immunol. 2025 Jan 13;15:1457324. doi: 10.3389/fimmu.2024.1457324. eCollection 2024.
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Bridging systems biology and tissue engineering: Unleashing the full potential of complex 3D tissue models of disease.
Biophys Rev (Melville). 2024 Apr 10;5(2):021301. doi: 10.1063/5.0179125. eCollection 2024 Jun.
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A Systems Approach to Biomechanics, Mechanobiology, and Biotransport.
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Systems bioengineering approaches for developmental toxicology.
Comput Struct Biotechnol J. 2023 Jun 7;21:3272-3279. doi: 10.1016/j.csbj.2023.06.005. eCollection 2023.
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Progress in mimicking brain microenvironments to understand and treat neurological disorders.
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Modeling the complete kinetics of coxsackievirus B3 reveals human determinants of host-cell feedback.
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Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition).
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A Systems-Based Approach for Cyanide Overproduction by for Gold Bioleaching Enhancement.
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Perspective: Dimensions of the scientific method.
PLoS Comput Biol. 2019 Sep 12;15(9):e1007279. doi: 10.1371/journal.pcbi.1007279. eCollection 2019 Sep.
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Tools to reverse-engineer multicellular systems: case studies using the fruit fly.
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Modeling Development and Disease with Organoids.
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Early signaling dynamics of the epidermal growth factor receptor.
Proc Natl Acad Sci U S A. 2016 Mar 15;113(11):3114-9. doi: 10.1073/pnas.1521288113. Epub 2016 Feb 29.
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Exploiting Temporal Collateral Sensitivity in Tumor Clonal Evolution.
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Constraints on Fluctuations in Sparsely Characterized Biological Systems.
Phys Rev Lett. 2016 Feb 5;116(5):058101. doi: 10.1103/PhysRevLett.116.058101. Epub 2016 Feb 1.
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Learning (from) the errors of a systems biology model.
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Limits to the precision of gradient sensing with spatial communication and temporal integration.
Proc Natl Acad Sci U S A. 2016 Feb 9;113(6):E689-95. doi: 10.1073/pnas.1509597112. Epub 2016 Jan 20.
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Antisense transcription as a tool to tune gene expression.
Mol Syst Biol. 2016 Jan 14;12(1):854. doi: 10.15252/msb.20156540.
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Do genome-scale models need exact solvers or clearer standards?
Mol Syst Biol. 2015 Oct 14;11(10):831. doi: 10.15252/msb.20156157.
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Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome.
PLoS Comput Biol. 2015 Jun 23;11(5):e1004338. doi: 10.1371/journal.pcbi.1004338. eCollection 2015 May.
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IκBβ enhances the generation of the low-affinity NFκB/RelA homodimer.
Nat Commun. 2015 May 7;6:7068. doi: 10.1038/ncomms8068.

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