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新种嗜热假单胞菌,一种从红树林沉积物中分离出的促进植物生长的细菌。

Pseudomonas aestus sp. nov., a plant growth-promoting bacterium isolated from mangrove sediments.

作者信息

Vasconcellos Rafael L F, Santos Suikinai Nobre, Zucchi Tiago Domingues, Silva Fábio Sérgio Paulino, Souza Danilo Tosta, Melo Itamar Soares

机构信息

Laboratory of Environmental Microbiology, Embrapa Environment, Jaguariúna, Rod SP 340, KM 127,5, São Paulo, 13820-000, Brazil.

Agrivalle, Av. Tranquillo Giannini, 1050, Salto, 13329-600, Brazil.

出版信息

Arch Microbiol. 2017 Oct;199(8):1223-1229. doi: 10.1007/s00203-017-1410-1. Epub 2017 Jul 12.

Abstract

Strain CMAA 1215, a Gram-reaction-negative, aerobic, catalase positive, polarly flagellated, motile, rod-shaped (0.5-0.8 × 1.3-1.9 µm) bacterium, was isolated from mangrove sediments, Cananéia Island, Brazil. Analysis of the 16S rRNA gene sequences showed that strain CMAA 1215 forms a distinct phyletic line within the Pseudomonas putida subclade, being closely related to P. plecoglossicida ATCC 700383, P. monteilii NBRC 103158, and P. taiwanensis BCRC 17751 of sequence similarity of 98.86, 98.73, and 98.71%, respectively. Genomic comparisons of the strain CMAA 1215 with its closest phylogenetic type strains using average nucleotide index (ANI) and DNA:DNA relatedness approaches revealed 84.3-85.3% and 56.0-63.0%, respectively. A multilocus sequence analysis (MLSA) performed concatenating 16S rRNA, gyrB and rpoB gene sequences from the novel species was related with Pseudomonas putida subcluster and formed a new phylogenetic lineage. The phenotypic, physiological, biochemical, and genetic characteristics support the assignment of CMAA 1215 to the genus Pseudomonas, representing a novel species. The name Pseudomonas aestus sp.nov. is proposed, with CMAA 1215 (=NRRL B-653100 = CBMAI 1962) as the type strain.

摘要

菌株CMAA 1215是一种革兰氏阴性、需氧、过氧化氢酶阳性、极生鞭毛、运动、杆状(0.5 - 0.8×1.3 - 1.9 µm)的细菌,从巴西卡纳内亚岛的红树林沉积物中分离得到。16S rRNA基因序列分析表明,菌株CMAA 1215在恶臭假单胞菌亚分支内形成了一个独特的系统发育谱系,与鱼假单胞菌ATCC 700383、蒙特利假单胞菌NBRC 103158和台湾假单胞菌BCRC 17751密切相关,序列相似性分别为98.86%、98.73%和98.71%。使用平均核苷酸指数(ANI)和DNA:DNA相关性方法对菌株CMAA 1215与其最接近的系统发育型菌株进行基因组比较,结果分别显示为84.3 - 85.3%和56.0 - 63.0%。对来自该新物种的16S rRNA、gyrB和rpoB基因序列进行串联的多位点序列分析(MLSA),结果表明其与恶臭假单胞菌亚群相关,并形成了一个新的系统发育谱系。表型、生理、生化和遗传特征支持将CMAA 1215归为假单胞菌属,代表一个新物种。提议将其命名为嗜热假单胞菌(Pseudomonas aestus sp.nov.),以CMAA 1215(=NRRL B - 653100 = CBMAI 1962)作为模式菌株。

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