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UCSF ChimeraX: Meeting modern challenges in visualization and analysis.
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Software extensions to UCSF chimera for interactive visualization of large molecular assemblies.
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Visualizing density maps with UCSF Chimera.
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Enhancing UCSF Chimera through web services.
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RRDistMaps: a UCSF Chimera tool for viewing and comparing protein distance maps.
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Molecular Visualization on the Holodeck.
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Structural evolution of nitrogenase over 3 billion years.
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Stomatin encapsulates aquaporin-1 and urea transporter-B in the erythrocyte membrane.
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The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.
Nucleic Acids Res. 2017 Jan 4;45(D1):D362-D368. doi: 10.1093/nar/gkw937. Epub 2016 Oct 18.
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UniProt: the universal protein knowledgebase.
Nucleic Acids Res. 2017 Jan 4;45(D1):D158-D169. doi: 10.1093/nar/gkw1099. Epub 2016 Nov 29.
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CATH: an expanded resource to predict protein function through structure and sequence.
Nucleic Acids Res. 2017 Jan 4;45(D1):D289-D295. doi: 10.1093/nar/gkw1098. Epub 2016 Nov 28.
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On the interpretation of electron microscopic maps of biological macromolecules.
Protein Sci. 2017 Jan;26(1):122-129. doi: 10.1002/pro.3060. Epub 2016 Oct 15.
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Re-evaluation of low-resolution crystal structures via interactive molecular-dynamics flexible fitting (iMDFF): a case study in complement C4.
Acta Crystallogr D Struct Biol. 2016 Sep;72(Pt 9):1006-16. doi: 10.1107/S2059798316012201. Epub 2016 Aug 18.
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The Pfam protein families database: towards a more sustainable future.
Nucleic Acids Res. 2016 Jan 4;44(D1):D279-85. doi: 10.1093/nar/gkv1344. Epub 2015 Dec 15.
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Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res. 2016 Jan 4;44(D1):D7-19. doi: 10.1093/nar/gkv1290. Epub 2015 Nov 28.
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Multi-scale Visualization of Molecular Architecture Using Real-Time Ambient Occlusion in Sculptor.
PLoS Comput Biol. 2015 Oct 27;11(10):e1004516. doi: 10.1371/journal.pcbi.1004516. eCollection 2015 Oct.
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OpenMM: A Hardware Independent Framework for Molecular Simulations.
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