Department of Molecular & Cell Biology, University of Cape Town, Private Bag X3, Rondebosch, 7701 Cape Town, South Africa.
Syst Appl Microbiol. 2017 Oct;40(7):423-429. doi: 10.1016/j.syapm.2017.07.009. Epub 2017 Aug 18.
The genera Microbispora and Sphaerimonospora were examined for GyrB and RecA amino-acid signatures to determine whether molecular-signature analyses support the recent establishment of the genus Sphaerimonospora. The creation of Sphaerimonospora was based mainly upon morphological differences between Microbispora and Sphaerimonospora and the clustering of the type strains of the two genera in phylogenetic trees based on a multilocus sequence analysis. The molecular-signature analyses showed that all members of Sphaerimonospora can be distinguished from all members of Microbispora at 14 amino acid positions in the GyrB protein and at four positions in the shorter RecA protein. These amino acid differences can be used as signatures to differentiate the members of these genera from each other and thus provide support for the establishment of the genus Sphaerimonospora. This is the first demonstration of the use of molecular signatures to support the establishment of a new genus in the family Streptosporangiaceae. Following the transfer of Microbispora mesophila and Microbispora thailandensis from Microbispora to Sphaerimonospora, all species in the genus Microbispora are characterised by the insertion of a small, hydrophobic amino acid after position 208 in the GyrB protein. This insertion is absent from the GyrB protein of members of the genus Sphaerimonospora.
考察了细杆菌属和球形单胞菌属的 GyrB 和 RecA 氨基酸特征,以确定分子特征分析是否支持球形单胞菌属的最近建立。球形单胞菌属的创建主要基于细杆菌属和球形单胞菌属之间的形态差异,以及基于多位点序列分析的两种属的模式菌株在系统发育树中的聚类。分子特征分析表明,在 GyrB 蛋白的 14 个氨基酸位置和较短的 RecA 蛋白的 4 个位置,所有球形单胞菌属的成员都可以与细杆菌属的所有成员区分开来。这些氨基酸差异可用作特征来区分这些属的成员,从而为球形单胞菌属的建立提供支持。这是首次使用分子特征来支持链霉菌科中新属建立的例证。将嗜温和泰国细杆菌从细杆菌属转移到球形单胞菌属后,细杆菌属的所有物种在 GyrB 蛋白的 208 位后插入一个小的疏水性氨基酸。球形单胞菌属成员的 GyrB 蛋白中不存在这种插入。