Boden Rich, Scott Kathleen M, Rae Alexander W, Hutt Lee P
School of Biological and Marine Sciences, University of Plymouth, Plymouth, Devon, UK.
Sustainable Earth Institute, University of Plymouth, Plymouth, Devon, UK.
Int J Syst Evol Microbiol. 2017 Oct;67(10):4205-4209. doi: 10.1099/ijsem.0.002279. Epub 2017 Sep 18.
The genus Thiomicrorhabdus (Tmr) in the Piskirickettsiaceae in the Thiotrichales of the Gammaproteobacteria contains four species of sulfur-oxidising obligate chemolithoautotroph with validly published names, all previously classified as Thiomicrospira (Tms) species. Here we demonstrate that Thiomicrospira hydrogeniphila, a recently published hydrogen-utilising chemolithoautotroph closely related to Thiomicrorhabdus frisia (type species of Thiomicrorhabdus) should be classified as a member of the genus Thiomicrorhabdus and not Thiomicrospira, as Thiomicrorhabdus hydrogeniphila comb. nov., on the basis of comparative physiology and morphology as well as 16S rRNA (rrs) gene identity of Tms. hydrogeniphila MAS2 being closer to that of Tmr. frisia JB-A2 (99.1 %) than to Tms. pelophila DSM 1534 (90.5 %) or Hydrogenovibrio marinus MH-110 (94.1 %), and on the basis of the topology of 16S rRNA gene maximum likelihood trees, which clearly place Tms. hydrogeniphila within the genus Thiomicrorhabdus. It was also noted that thiosulfate-grown Thiomicrorhabdus spp. can be distinguished from Thiomicrospira spp. or Hydrogenovibrio spp. on the basis of the 3 dominant fatty acids (C16 : 1, C18 : 1 and C16 : 0), and from other Thiomicrorhabdus spp. on the basis of the fourth dominant fatty acid, which varies between the species of this genus - which could provide a useful diagnostic method. We provide an emended description of Thiomicrorhabdus (Boden R, Scott KM, Williams J, Russel S, Antonen K et al.Int J Syst Evol Microbiol 2017;67:1140-1151) to take into account the properties of Thiomicrorhabdus hydrogeniphila comb. nov.
γ-变形菌纲硫发菌目皮氏立克次氏体科中的硫微杆菌属(Tmr)包含四种具有有效发表名称的专性硫氧化化能自养菌,它们之前均被归类为硫微螺菌属(Tms)的物种。在此,我们证明,最近发表的嗜氢硫微螺菌是一种利用氢气的化能自养菌,与弗里西亚硫微杆菌(硫微杆菌属的模式种)密切相关,基于比较生理学和形态学以及硫微螺菌属嗜氢菌MAS2的16S rRNA(rrs)基因同一性,应将其归类为硫微杆菌属的成员,而非硫微螺菌属,即嗜氢硫微杆菌新组合。嗜氢硫微螺菌MAS2的16S rRNA基因同一性与弗里西亚硫微杆菌JB - A2(99.1%)更接近,而与嗜硫硫微螺菌DSM 1534(90.5%)或海栖氢弧菌MH - 110(94.1%)较远,并且基于16S rRNA基因最大似然树的拓扑结构,该结构明确将嗜氢硫微螺菌置于硫微杆菌属内。还注意到,基于3种主要脂肪酸(C16:1、C18:1和C16:0),硫代硫酸盐培养的硫微杆菌属物种可与硫微螺菌属或氢弧菌属物种区分开来,并且基于第四种主要脂肪酸,该脂肪酸在硫微杆菌属的不同物种之间有所变化,这可为一种有用的诊断方法。我们提供了硫微杆菌属的修订描述(博登R、斯科特KM、威廉姆斯J、拉塞尔S、安东宁K等。《国际系统与进化微生物学杂志》2017年;67:1140 - 1151),以考虑嗜氢硫微杆菌新组合的特性。