European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Bioinformatics. 2017 Nov 15;33(22):3645-3647. doi: 10.1093/bioinformatics/btx469.
Sequence logos have become a crucial visualization method for studying underlying sequence patterns in the genome. Despite this, there remains a scarcity of software packages that provide the versatility often required for such visualizations. ggseqlogo is an R package built on the ggplot2 package that aims to address this issue. ggseqlogo offers native illustration of publication-ready DNA, RNA and protein sequence logos in a highly customizable fashion with features including multi-logo plots, qualitative and quantitative colour schemes, annotation of logos and integration with other plots. The package is intuitive to use and seamlessly integrates into R analysis pipelines.
ggseqlogo is released under the GNU licence and is freely available via CRAN-The Comprehensive R Archive Network https://cran.r-project.org/web/packages/ggseqlogo. A detailed tutorial can be found at https://omarwagih.github.io/ggseqlogo.
序列 logo 已经成为研究基因组中潜在序列模式的重要可视化方法。尽管如此，仍然缺乏能够提供此类可视化所需的多功能性的软件包。ggseqlogo 是一个基于 ggplot2 包构建的 R 包，旨在解决这个问题。ggseqlogo 以高度可定制的方式提供发布级别的 DNA、RNA 和蛋白质序列 logo 的原生插图，具有多 logo 图、定性和定量配色方案、logo 注释以及与其他图的集成等功能。该包易于使用，并可无缝集成到 R 分析管道中。
ggseqlogo 根据 GNU 许可证发布，可通过 CRAN-The Comprehensive R Archive Network https://cran.r-project.org/web/packages/ggseqlogo 免费获得。详细的教程可以在 https://omarwagih.github.io/ggseqlogo 找到。
