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一种指导光合作用代谢遗传工程的数学模型。

A mathematical model to guide genetic engineering of photosynthetic metabolism.

机构信息

PAR-Lab (Padua Algae Research Laboratory), Dept. of Biology, University of Padova, Via Ugo Bassi 58/B, 35121 Padova, Italy.

CAPE-Lab (Computer-Aided Process Engineering Laboratory) and PAR-Lab (Padua Algae Research Laboratory), Department of Industrial Engineering, University of Padova, via Marzolo 9, 35131 Padova, Italy.

出版信息

Metab Eng. 2017 Nov;44:337-347. doi: 10.1016/j.ymben.2017.11.002. Epub 2017 Nov 9.

Abstract

The optimization of algae biomass productivity in industrial cultivation systems requires genetic improvement of wild type strains isolated from nature. One of the main factors affecting algae productivity is their efficiency in converting light into chemical energy and this has been a major target of recent genetic efforts. However, photosynthetic productivity in algae cultures depends on many environmental parameters, making the identification of advantageous genotypes complex and the achievement of concrete improvements slow. In this work, we developed a mathematical model to describe the key factors influencing algae photosynthetic productivity in a photobioreactor, using experimental measurements for the WT strain of Nannochloropsis gaditana. The model was then exploited to predict the effect of potential genetic modifications on algae performances in an industrial context, showing the ability to predict the productivity of mutants with specific photosynthetic phenotypes. These results show that a quantitative model can be exploited to identify the genetic modifications with the highest impact on productivity taking into full account the complex influence of environmental conditions, efficiently guiding engineering efforts.

摘要

在工业培养系统中优化藻类生物质生产力需要对从自然界中分离出的野生型菌株进行遗传改良。影响藻类生产力的主要因素之一是它们将光转化为化学能的效率,这一直是最近遗传努力的主要目标。然而,藻类培养物的光合生产力取决于许多环境参数,使得有利基因型的鉴定变得复杂,具体改进的实现速度也较慢。在这项工作中,我们使用 Nannochloropsis gaditana 的 WT 菌株的实验测量值,开发了一个数学模型来描述影响光生物反应器中藻类光合作用生产力的关键因素。然后,该模型被用于预测潜在遗传修饰对工业环境中藻类性能的影响,显示了预测具有特定光合作用表型的突变体生产力的能力。这些结果表明,可以利用定量模型来确定对生产力影响最大的遗传修饰,充分考虑环境条件的复杂影响,有效地指导工程努力。

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