从日本静冈县一处洗浴设施的地下水中分离出的新型分枝杆菌——静冈-1菌株的基因组序列草图
Draft Genome Sequence of sp. Strain shizuoka-1, a Novel Mycobacterium Isolated from Groundwater of a Bathing Facility in Shizuoka, Japan.
作者信息
Yoshida Mitsunori, Izumiyama Shinji, Fukano Hanako, Sugiyama Kanji, Suzuki Masato, Shibayama Keigo, Hoshino Yoshihiko
机构信息
Department of Mycobacteriology, National Institute of Infectious Diseases, Higashimurayama, Tokyo, Japan.
Department of Parasitology, National Institute of Infectious Diseases, Shinjuku, Tokyo, Japan.
出版信息
Genome Announc. 2017 Nov 22;5(47):e01309-17. doi: 10.1128/genomeA.01309-17.
Abstract
sp. strain shizuoka-1 is a rapidly growing scotochromogenic mycobacterium and was isolated from well water for a bathing facility in Shizuoka Prefecture in Japan. Here, we report the draft sequence of its genome, comprising a 6.5-Mb chromosome. This mycobacterium has 83.1% identity with , a human pathogen.
摘要
sp. 静冈-1菌株是一种快速生长的暗产色分枝杆菌，从日本静冈县一个洗浴设施的井水中分离得到。在此，我们报告其基因组草图序列，包含一条6.5 Mb的染色体。该分枝杆菌与一种人类病原体具有83.1%的同一性。
相似文献
1
Draft Genome Sequence of sp. Strain shizuoka-1, a Novel Mycobacterium Isolated from Groundwater of a Bathing Facility in Shizuoka, Japan.
Genome Announc. 2017 Nov 22;5(47):e01309-17. doi: 10.1128/genomeA.01309-17.
2
Draft Genome Sequence of Mycobacterium obuense Strain UC1, Isolated from Patient Sputum.
Genome Announc. 2015 Jun 11;3(3):e00612-15. doi: 10.1128/genomeA.00612-15.
3
Mycobacterium shigaense sp. nov., a slow-growing, scotochromogenic species, is a member of the Mycobacterium simiae complex.
Int J Syst Evol Microbiol. 2018 Aug;68(8):2437-2442. doi: 10.1099/ijsem.0.002845. Epub 2018 Jun 25.
4
Mycobacterium grossiae sp. nov., a rapidly growing, scotochromogenic species isolated from human clinical respiratory and blood culture specimens.
Int J Syst Evol Microbiol. 2017 Nov;67(11):4345-4351. doi: 10.1099/ijsem.0.002216. Epub 2017 Oct 6.
5
Mycobacterium aquiterrae sp. nov., a rapidly growing bacterium isolated from groundwater.
Int J Syst Evol Microbiol. 2017 Oct;67(10):4104-4110. doi: 10.1099/ijsem.0.002261. Epub 2017 Sep 18.
6
Mycobacterium celeriflavum sp. nov., a rapidly growing scotochromogenic bacterium isolated from clinical specimens.
Int J Syst Evol Microbiol. 2015 Feb;65(Pt 2):510-515. doi: 10.1099/ijs.0.064832-0. Epub 2014 Nov 11.
7
Mycobacterium rhodesiae sp. nov. A new species of rapid-growing scotochromogenic mycobacteria.
Jpn J Microbiol. 1971 Sep;15(5):407-16. doi: 10.1111/j.1348-0421.1971.tb00598.x.
8
Draft Genome Sequence of Mycobacterium acapulcensis Strain CSURP1424.
Genome Announc. 2016 Aug 11;4(4):e00836-16. doi: 10.1128/genomeA.00836-16.
9
Mycobacterium iranicum sp. nov., a rapidly growing scotochromogenic species isolated from clinical specimens on three different continents.
Int J Syst Evol Microbiol. 2013 Apr;63(Pt 4):1383-1389. doi: 10.1099/ijs.0.043562-0. Epub 2012 Jul 27.
10
Mycobacterium seoulense sp. nov., a slowly growing scotochromogenic species.
Int J Syst Evol Microbiol. 2007 Mar;57(Pt 3):594-599. doi: 10.1099/ijs.0.64744-0.
引用本文的文献
1
Atmospheric chemosynthesis is phylogenetically and geographically widespread and contributes significantly to carbon fixation throughout cold deserts.
ISME J. 2022 Nov;16(11):2547-2560. doi: 10.1038/s41396-022-01298-5. Epub 2022 Aug 6.
2
Complete Genome Sequence of Mycobacterium shigaense.
Genome Announc. 2018 Jun 21;6(25):e00552-18. doi: 10.1128/genomeA.00552-18.
3
Naturally occurring a loss of a giant plasmid from Mycobacterium ulcerans subsp. shinshuense makes it non-pathogenic.
Sci Rep. 2018 May 29;8(1):8218. doi: 10.1038/s41598-018-26425-1.
4
Complete Genome Sequence of a Type Strain of subsp. , a Member of the Complex.
Genome Announc. 2018 Feb 1;6(5):e01530-17. doi: 10.1128/genomeA.01530-17.
本文引用的文献
1
Complete Genome Sequence of .
Genome Announc. 2017 Aug 17;5(33):e00810-17. doi: 10.1128/genomeA.00810-17.
2
Legionella prevalence and risk of legionellosis in Japanese households.
Epidemiol Infect. 2017 May;145(7):1398-1408. doi: 10.1017/S0950268817000036. Epub 2017 Feb 7.
3
Outbreak of Legionnaire's Disease Caused by Legionella pneumophila Serogroups 1 and 13.
Emerg Infect Dis. 2017 Feb;23(2):349-351. doi: 10.3201/eid2302.161012.
4
Differential diagnostic assays for discriminating mycobacteria, especially for nontuberculous mycobacteria: what does the future hold?
Future Microbiol. 2015;10(2):205-16. doi: 10.2217/fmb.14.120.
5
Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads.
Genome Res. 2014 Aug;24(8):1384-95. doi: 10.1101/gr.170720.113. Epub 2014 Apr 22.
6
[Legionella contamination risk factors in non-circulating hot spring water].
Kansenshogaku Zasshi. 2009 Jan;83(1):36-44. doi: 10.11150/kansenshogakuzasshi.83.36.
7
CAPD peritonitis caused by Mycobacterium rhodesiae.
Perit Dial Int. 2008 Jan-Feb;28(1):97-9.
8
Mycobacterium rhodesiae sp. nov. A new species of rapid-growing scotochromogenic mycobacteria.
Jpn J Microbiol. 1971 Sep;15(5):407-16. doi: 10.1111/j.1348-0421.1971.tb00598.x.
Zotero 插件