Zhou Zhibin, Du Di, Chen Aimin, Zhu Lei
Department of Orthopaedic Trauma Surgery, Changzheng Hospital, Second Military Medical University, Shanghai 200003, China.
Department of Orthopaedic Trauma Surgery, Changzheng Hospital, Second Military Medical University, Shanghai 200003, China.
Gene. 2018 Feb 20;644:20-26. doi: 10.1016/j.gene.2017.12.020. Epub 2017 Dec 14.
Osteoarthritis (OA) is a widely prevalent degenerative joint disease characterized by articular cartilage degradation and joint inflammation. The pathogenesis of OA remains unclear, leading to a lack of effective treatment. Previous studies have reported that circular RNAs (circRNAs) are involved in the development of various diseases. However, the function of circRNAs and their roles in OA is largely unknown. Therefore, we aimed to investigate changes in circRNA expression and predict their functions in OA by using bioinformatics analysis. An OA model was established in mouse articular chondrocytes (MACs) treated by interleukin-1β (IL-1β), and then the circRNA profile was screened by Next Generation Sequencing. By comparing circRNA expression in IL-1β- treated MACs and normal controls, differentially expressed circRNAs were identified during OA pathogenesis, and differential expression levels of selected circRNAs were validated by qRT-PCR. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were employed to predict the functions of these circRNAs. Because circRNAs can act as "miRNA sponges", we also constructed a circRNA-miRNA network to predict their functions. A total of 255 circRNAs were found to be differentially expressed in IL-1β-treated MACs (p≤0.05; fold-change≥2) from the expression of the normal controls. Among them, 119 circRNAs were significantly up-regulated, and the other 136 were down-regulated. Seven circRNAs were randomly selected to verify the reliability of these profiles by quantitative qRT-PCR. After obtaining the parental genes of differentially expressed circRNA, the top 30 enrichment GO entries and KEGG pathways were annotated. Then, two significantly differentially expressed circRNAs (mmu-circRNA-30365 and mmu-circRNA-36866) were identified and selected for further analysis, meanwhile a circRNA-miRNA regulation network was created and the top five most likely functional-related target miRNAs of the circRNAs were collected. Although the exact mechanisms and biological functions of these circRNAs in the development of OA need further exploration, our findings do suggest that the differentially expressed circRNAs were involved in the pathogenesis of OA. Thus, our study brings us closer to understanding the pathogenic mechanisms and finding new molecular targets for the clinical treatment of osteoarthritis.
骨关节炎(OA)是一种广泛流行的退行性关节疾病,其特征在于关节软骨降解和关节炎症。OA的发病机制尚不清楚,导致缺乏有效的治疗方法。先前的研究报道,环状RNA(circRNAs)参与了各种疾病的发展。然而,circRNAs的功能及其在OA中的作用在很大程度上尚不清楚。因此,我们旨在通过生物信息学分析研究circRNA表达的变化并预测它们在OA中的功能。通过白细胞介素-1β(IL-1β)处理建立小鼠关节软骨细胞(MACs)的OA模型,然后通过下一代测序筛选circRNA谱。通过比较IL-1β处理的MACs和正常对照中的circRNA表达,在OA发病机制中鉴定出差异表达的circRNAs,并通过qRT-PCR验证所选circRNAs的差异表达水平。采用基因本体论(GO)和京都基因与基因组百科全书(KEGG)通路分析来预测这些circRNAs的功能。由于circRNAs可以充当“miRNA海绵”,我们还构建了一个circRNA-miRNA网络来预测它们的功能。从正常对照的表达中发现共有255个circRNAs在IL-1β处理的MACs中差异表达(p≤0.05;倍数变化≥2)。其中,119个circRNAs显著上调,另外136个下调。随机选择7个circRNAs通过定量qRT-PCR验证这些谱的可靠性。在获得差异表达的circRNA的亲本基因后,注释了前30个富集的GO条目和KEGG通路。然后,鉴定并选择了两个显著差异表达的circRNAs(mmu-circRNA-30365和mmu-circRNA-36866)进行进一步分析,同时创建了一个circRNA-miRNA调控网络,并收集了circRNAs最可能的前五个功能相关靶标miRNA。尽管这些circRNAs在OA发展中的确切机制和生物学功能需要进一步探索,但我们的研究结果确实表明差异表达的circRNAs参与了OA的发病机制。因此,我们的研究使我们更接近了解致病机制并找到骨关节炎临床治疗的新分子靶点。