Wu Y J, Chi X P, Chen F, Deng X L
Department of Geriatric Dentistry, Peking University School and Hospital of Stomatology & National Engineering Laboratory for Digital and Material Technology of Stomatology & Beijing Key Laboratory of Digital Stomatology, Beijing 100081, China; Department of Prosthodontics, Peking University School and Hospital of Stomatology & National Engineering Laboratory for Digital and Material Technology of Stomatology & Beijing Key Laboratory of Digital Stomatology, Beijing 100081, China.
Department of Prosthodontics, Peking University School and Hospital of Stomatology & National Engineering Laboratory for Digital and Material Technology of Stomatology & Beijing Key Laboratory of Digital Stomatology, Beijing 100081, China.
Beijing Da Xue Xue Bao Yi Xue Ban. 2018 Feb 18;50(1):5-12.
To investigate the characterization of the salivary microbiome in people with obesity and the differences in microbial composition, gene function and metabolic pathways of salivary microbiome between people with obesity and normal weight controls.
The study was carried out in people with obesity and age- and sex-matched normal weight controls. None of these selected participants had the systemic disease, oral mucosal disease or periodontal disease. Unstimulated saliva samples were collected and oral examination was conducted. DNAs from saliva samples were extracted and sequenced in an Illumina NextSeq 500 platform. Community composition, linear discriminant analysis of taxonomic differences,gene prediction, gene set construction and annotation of gene function were performed.
The classified bacterial reads of the samples were 2 630 428 for each sample. A total of 11 phyla, 19 classes, 26 orders, 41 families, 62 genera and 164 species were detected ultimately. All samples had the same predominant phyla (Proteobacteria, Firmicutes, Bacteroidetes, Actinobacteria and Fusobacteria). There were statistical differences between the groups at the class, order, family, genus and species levels. At the class level, Negativicutes and Erysipelotrichia were more abundant in the obesity group, while Flavobacteriia and Bateroidetes dominated in normal weight group (P<0.05). At the species level, 16 showed significant differences in relative abundance among the groups, in which Prevotella melaninogenica,Prevotella salivae,Solobacterium moorei and Atopobium parvulum ware more abundant in the obesity group, whereas Streptococcus sanguinis dominated in normal weight group (P<0.05). The people with obesity had a higher number of salivary microbial genes (P<0.05). We produced statistics on gene prediction and found salivary microbiome of obesity group had a higher number of genes (P < 0.05). Genes associated with the pathways of metabolism and environmental information processing and human diseases were significantly enriched in the saliva samples of people with obesity (P < 0.01).
Significant differences were seen in composition, gene function and metabolic pathways of salivary microbiome between people with obesity and normal weight people. We hope to go on further study with larger sample size in the near future.
研究肥胖人群唾液微生物组的特征,以及肥胖人群与正常体重对照者唾液微生物组在微生物组成、基因功能和代谢途径方面的差异。
该研究在肥胖人群以及年龄和性别匹配的正常体重对照者中进行。这些入选参与者均无全身性疾病、口腔黏膜疾病或牙周疾病。收集未刺激的唾液样本并进行口腔检查。从唾液样本中提取DNA,并在Illumina NextSeq 500平台上进行测序。进行群落组成分析、分类学差异的线性判别分析、基因预测、基因集构建以及基因功能注释。
每个样本的分类细菌读数为2630428。最终共检测到11个门、19个纲、26个目、41个科、62个属和164个种。所有样本具有相同的优势菌门(变形菌门、厚壁菌门、拟杆菌门、放线菌门和梭杆菌门)。在纲、目、科、属和种水平上,两组之间存在统计学差异。在纲水平上,肥胖组中Negativicutes和丹毒丝菌纲更为丰富,而黄杆菌纲和拟杆菌纲在正常体重组中占主导地位(P<0.05)。在种水平上,16种在各组间相对丰度存在显著差异,其中产黑色素普雷沃菌、唾液普雷沃菌、穆氏解脲胒球菌和微小阿托波菌在肥胖组中更为丰富,而血链球菌在正常体重组中占主导地位(P<0.05)。肥胖人群的唾液微生物基因数量更多(P<0.05)。我们进行了基因预测统计,发现肥胖组的唾液微生物组基因数量更多(P<0.05)。与代谢途径、环境信息处理和人类疾病相关的基因在肥胖人群的唾液样本中显著富集(P<0.01)。
肥胖人群与正常体重人群的唾液微生物组在组成、基因功能和代谢途径方面存在显著差异。我们希望在不久的将来进行更大样本量的进一步研究。