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阿尔茨海默病中 microRNA 和基因表达谱的分析:荟萃分析方法。

Analysis of microRNA and Gene Expression Profiles in Alzheimer's Disease: A Meta-Analysis Approach.

机构信息

National Institute of Genetic Engineering and Biotechnology (NIGEB), Tehran, Iran.

出版信息

Sci Rep. 2018 Mar 19;8(1):4767. doi: 10.1038/s41598-018-20959-0.

Abstract

Understanding the molecular mechanisms underlying Alzheimer's disease (AD) is necessary for the diagnosis and treatment of this neurodegenerative disorder. It is therefore important to detect the most important genes and miRNAs, which are associated with molecular events, and studying their interactions for recognition of AD mechanisms. Here we focus on the genes and miRNAs expression profile, which we have detected the miRNA target genes involved in AD. These are the most quintessential to find the most important miRNA, to target genes and their important pathways. A total of 179 differentially expressed miRNAs (DEmiRs) and 1404 differentially expressed genes (DEGs) were obtained from a comprehensive meta-analysis. Also, regions specific genes with their molecular function in AD have been demonstrated. We then focused on miRNAs which regulated most genes in AD, alongside we analyzed their pathways. The miRNA-30a-5p and miRNA-335 elicited a major function in AD after analyzing the regulatory network, we showed they were the most regulatory miRNAs in the AD. In conclusion, we demonstrated the most important genes, miRNAs, miRNA-mRNA interactions and their related pathways in AD using Bioinformatics methods. Accordingly, our defined genes and miRNAs could be used for future molecular studies in the context of AD.

摘要

了解阿尔茨海默病(AD)的分子机制对于这种神经退行性疾病的诊断和治疗是必要的。因此,检测与分子事件相关的最重要的基因和 miRNA 并研究它们的相互作用以识别 AD 机制非常重要。在这里,我们专注于基因和 miRNA 表达谱,我们已经检测到了 miRNA 靶基因在 AD 中涉及的基因。这些是发现最重要的 miRNA、靶基因及其重要途径的关键。从综合荟萃分析中获得了 179 个差异表达 miRNA(DEmiR)和 1404 个差异表达基因(DEG)。此外,还证明了在 AD 中具有特定区域基因及其分子功能。然后,我们专注于调节 AD 中大多数基因的 miRNA,同时分析它们的途径。在分析调控网络后,miRNA-30a-5p 和 miRNA-335 在 AD 中发挥了主要作用,我们表明它们是 AD 中最具调节作用的 miRNA。总之,我们使用生物信息学方法证明了 AD 中最重要的基因、miRNA、miRNA-mRNA 相互作用及其相关途径。因此,我们定义的基因和 miRNA 可用于 AD 背景下的未来分子研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/718f/5859169/bd9f26ef4eb1/41598_2018_20959_Fig1_HTML.jpg

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