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蓝藻非血红素铁依赖性脂肪族卤化酶WelO5和AmbO5的体外分析

In Vitro Analysis of Cyanobacterial Nonheme Iron-Dependent Aliphatic Halogenases WelO5 and AmbO5.

作者信息

Liu Xinyu

机构信息

University of Pittsburgh, Pittsburgh, PA, United States.

出版信息

Methods Enzymol. 2018;604:389-404. doi: 10.1016/bs.mie.2018.02.015. Epub 2018 Apr 11.

Abstract

Aliphatic carbon-halogen (C-X) bonds are prevalent in modern pharmaceuticals and bioactive natural products. Three distinct chemical strategies are known in Nature to generate these structural motifs. The first is via the nucleophilic substitution at a prefunctionalized electrophilic carbon center with a halide anion (X), known for the S-adenosyl-l-methionine-dependent halogenases. The second is via the electrophilic activation of an alkene or its equivalent by a halenium ion (X) donor, known for the haloperoxidases and flavin-dependent halogenases. The third is via the direct functionalization of an unactivated aliphatic C-H bond with a halogen radical (X) equivalent, known for the 2-oxo-glutarate and nonheme iron-dependent halogenases. Due to the ubiquitous nature of aliphatic C-H groups in organic molecules, transformations that permit chemo-, regio-, and stereo-selective modification(s) at an unactivated sp-carbon center have been a long sought-after goal in chemical science. Two nonheme iron-dependent halogenases, WelO5 and AmbO5 involved in the biogenesis of cyanobacterial hapalindole-type alkaloids, have been recently shown able to perform this type of challenging transformation. In this chapter, experimental details for the in vitro reconstitution of WelO5 and AmbO5 enzymatic activities are presented.

摘要

脂肪族碳-卤(C-X)键在现代药物和生物活性天然产物中普遍存在。自然界中已知三种不同的化学策略来生成这些结构基序。第一种是通过卤化物阴离子(X)在预官能化的亲电碳中心进行亲核取代,这是以依赖S-腺苷-L-甲硫氨酸的卤化酶为代表。第二种是通过卤鎓离子(X)供体对烯烃或其类似物进行亲电活化,这是以卤过氧化物酶和黄素依赖性卤化酶为代表。第三种是通过与卤素自由基(X)类似物对未活化的脂肪族C-H键进行直接官能化,这是以2-氧代戊二酸和非血红素铁依赖性卤化酶为代表。由于脂肪族C-H基团在有机分子中无处不在,能够在未活化的sp碳中心进行化学、区域和立体选择性修饰的转化一直是化学科学中一个长期追求的目标。最近发现,参与蓝藻型哈帕林多生物碱生物合成的两种非血红素铁依赖性卤化酶WelO5和AmbO5能够进行这种具有挑战性的转化。在本章中,将介绍WelO5和AmbO5酶活性体外重组的实验细节。

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