Giraldo Olga, Garcia Alexander, Corcho Oscar
Ontology Engineering Group, Campus de Montegancedo, Boadilla del Monte, Universidad Politécnica de Madrid, Madrid, Spain.
Technische Universität Graz, Graz, Austria.
PeerJ. 2018 May 28;6:e4795. doi: 10.7717/peerj.4795. eCollection 2018.
Experimental protocols are key when planning, performing and publishing research in many disciplines, especially in relation to the reporting of materials and methods. However, they vary in their content, structure and associated data elements. This article presents a guideline for describing key content for reporting experimental protocols in the domain of life sciences, together with the methodology followed in order to develop such guideline. As part of our work, we propose a checklist that contains 17 data elements that we consider fundamental to facilitate the execution of the protocol. These data elements are formally described in the SMART Protocols ontology. By providing guidance for the key content to be reported, we aim (1) to make it easier for authors to report experimental protocols with necessary and sufficient information that allow others to reproduce an experiment, (2) to promote consistency across laboratories by delivering an adaptable set of data elements, and (3) to make it easier for reviewers and editors to measure the quality of submitted manuscripts against an established criteria. Our checklist focuses on the content, what should be included. Rather than advocating a specific format for protocols in life sciences, the checklist includes a full description of the key data elements that facilitate the execution of the protocol.
实验方案在许多学科的研究规划、实施和发表过程中至关重要,尤其是在材料和方法的报告方面。然而,它们在内容、结构和相关数据元素上存在差异。本文提出了一份指南,用于描述生命科学领域实验方案报告的关键内容,以及制定该指南所遵循的方法。作为我们工作的一部分,我们提出了一个包含17个数据元素的清单,我们认为这些元素对于促进方案的执行至关重要。这些数据元素在SMART方案本体中进行了正式描述。通过为要报告的关键内容提供指导,我们旨在:(1)使作者更容易报告包含必要且充分信息的实验方案,以便其他人能够重复实验;(2)通过提供一套可适应的数据元素来促进各实验室之间的一致性;(3)使审稿人和编辑更容易根据既定标准衡量提交稿件的质量。我们的清单关注的是内容,即应该包含什么。该清单并未倡导生命科学领域方案的特定格式,而是对有助于方案执行的关键数据元素进行了全面描述。