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Evidence for archaic adaptive introgression in humans.人类古老适应性基因渗入的证据。
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10
Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation.动物中的适应性基因渗入:实例与新突变和遗传漂变作为适应性变异来源的比较。
Mol Ecol. 2013 Sep;22(18):4606-18. doi: 10.1111/mec.12415. Epub 2013 Aug 1.

渐进选择下基因组块的渗入。

Introgression of a Block of Genome Under Infinitesimal Selection.

机构信息

Institute of Science and Technology Austria (IST Austria), Klosterneuburg A-3400, Austria.

Institute of Science and Technology Austria (IST Austria), Klosterneuburg A-3400, Austria

出版信息

Genetics. 2018 Aug;209(4):1279-1303. doi: 10.1534/genetics.118.301018. Epub 2018 Jun 12.

DOI:10.1534/genetics.118.301018
PMID:29895560
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6063232/
Abstract

Adaptive introgression is common in nature and can be driven by selection acting on multiple, linked genes. We explore the effects of polygenic selection on introgression under the infinitesimal model with linkage. This model assumes that the introgressing block has an effectively infinite number of loci, each with an infinitesimal effect on the trait under selection. The block is assumed to introgress under directional selection within a native population that is genetically homogeneous. We use individual-based simulations and a branching process framework to compute various statistics of the introgressing block, and explore how these depend on parameters such as the map length and initial trait value associated with the introgressing block, the genetic variability along the block, and the strength of selection. Our results show that the introgression dynamics of a block under infinitesimal selection are qualitatively different from the dynamics of neutral introgression. We also find that, in the long run, surviving descendant blocks are likely to have intermediate lengths, and clarify how their length is shaped by the interplay between linkage and infinitesimal selection. Our results suggest that it may be difficult to distinguish the long-term introgression of a block of genome with a single, strongly selected, locus from the introgression of a block with multiple, tightly linked and weakly selected loci.

摘要

适应性基因渐渗在自然界中很常见,它可能是由作用于多个连锁基因的选择驱动的。我们在连锁的无穷小模型下探索多基因选择对渐渗的影响。该模型假设渐渗块有一个有效无限数量的基因座,每个基因座对选择下的性状有微小的影响。假设在遗传同质的本地种群中,渐渗块在定向选择下渐渗。我们使用基于个体的模拟和分支过程框架来计算渐渗块的各种统计数据,并探索这些统计数据如何取决于参数,如与渐渗块相关的图谱长度和初始性状值、沿块的遗传变异性以及选择的强度。我们的结果表明,在无穷小选择下,块的渐渗动力学与中性渐渗的动力学在性质上有所不同。我们还发现,从长远来看,幸存的后代块很可能具有中等长度,并阐明了连锁和无穷小选择之间的相互作用如何塑造它们的长度。我们的结果表明,区分一个具有单一、强烈选择的基因座的基因组块的长期渐渗与具有多个、紧密连锁和弱选择基因座的块的渐渗可能很困难。