Leibniz Institute for Natural Product Research and Infection Biology-Hans Knöll Institute , Beutenbergstraβe 11a , D-07745 Jena , Germany.
Department of Applied and Ecological Microbiology, Institute of Microbiology , Friedrich Schiller University , Philosophenweg 12 , D-07743 Jena , Germany.
ACS Chem Biol. 2018 Aug 17;13(8):1990-1995. doi: 10.1021/acschembio.8b00445. Epub 2018 Jun 25.
Despite the wealth of physiological knowledge and plentiful genomes available, only few natural products of anaerobic bacteria have been identified until today and even less have been linked to their biosynthetic gene cluster. Here, we analyzed a unique NRPS-PKS hybrid gene cluster from an anaerobic Epsilonproteobacterium ( Sulfurospirillum barnesii). Phylogenetic analysis of key biosynthetic genes, gene expression studies, and comparative metabolomics resulted in the identification of the first anoxically biosynthesized NRPS-PKS hybrid metabolite: a lipo-dipeptide with a vinylogous side chain, called barnesin A. The absolute structure was verified by a modular total synthesis, and barnesin and derivatives were found to have antimicrobial activity, as well as selective and nanomolar inhibitory activity, against pharmacological important cysteine proteases, such as cathepsin B.
尽管拥有丰富的生理学知识和大量的基因组,但直到今天,人们仅鉴定出少数厌氧细菌的天然产物,并且与它们的生物合成基因簇相关的天然产物更少。在这里,我们分析了一种来自厌氧 ε-变形菌(Sulfurospirillum barnesii)的独特的 NRPS-PKS 杂合基因簇。关键生物合成基因的系统发育分析、基因表达研究和比较代谢组学研究结果鉴定出第一个在厌氧条件下生物合成的 NRPS-PKS 杂合代谢产物:一种带有乙烯基侧链的脂二肽,称为 barnesin A。通过模块化全合成验证了 barnesin A 的绝对结构,并且 barnesin 及其衍生物具有抗菌活性,并且对药理学上重要的半胱氨酸蛋白酶(如组织蛋白酶 B)具有选择性和纳摩尔抑制活性。