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Enalos+ KNIME节点:用于药物发现的新型化学信息学工具。

Enalos+ KNIME Nodes: New Cheminformatics Tools for Drug Discovery.

作者信息

Varsou Dimitra-Danai, Nikolakopoulos Spyridon, Tsoumanis Andreas, Melagraki Georgia, Afantitis Antreas

机构信息

NovaMechanics Ltd., Nicosia, Cyprus.

出版信息

Methods Mol Biol. 2018;1824:113-138. doi: 10.1007/978-1-4939-8630-9_7.

Abstract

In this chapter we present and discuss Enalos+ nodes designed and developed by NovaMechanics Ltd. for the open-source KNIME platform, as a useful aid when dealing with cheminformatics and nanoinformatics problems or medicinal applications. Enalos+ nodes facilitate tasks performed in molecular modeling and allow access, data mining, and manipulation for multiple chemical databases through the KNIME interface. Enalos+ nodes automate common procedures that greatly facilitate the rapid workflow prototyping within KNIME. Μethods and techniques that are included in Enalos+ nodes are presented in order to offer a deeper understanding of the theoretical background of the incorporated functionalities. An emphasis is given to demonstrate the usefulness of Enalos+ nodes in different cheminformatics applications by presenting four indicative case studies. Specifically, we present case studies that underline the value and the effectiveness of the nodes for molecular descriptors calculation and QSAR predictive model development. In addition, case studies are also presented demonstrating the benefits of the use of Enalos+ nodes for database exploitation within a drug discovery project.

摘要

在本章中,我们展示并讨论由NovaMechanics有限公司为开源KNIME平台设计和开发的Enalos+节点,它在处理化学信息学和纳米信息学问题或药物应用时是一种有用的辅助工具。Enalos+节点便于在分子建模中执行任务,并允许通过KNIME接口对多个化学数据库进行访问、数据挖掘和操作。Enalos+节点可自动执行常见程序,极大地促进了KNIME内快速工作流程的原型设计。介绍了Enalos+节点中包含的方法和技术,以便更深入地理解所包含功能的理论背景。通过展示四个典型案例研究,重点阐述Enalos+节点在不同化学信息学应用中的实用性。具体而言,我们展示的案例研究突出了这些节点在计算分子描述符和开发QSAR预测模型方面的价值和有效性。此外,还展示了案例研究,证明了在药物发现项目中使用Enalos+节点进行数据库开发的好处。

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