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挖掘区块链技术在基因组学中的潜力。

Realizing the potential of blockchain technologies in genomics.

机构信息

Department of Computer Engineering, Bilkent University, Ankara 06800, Turkey.

Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.

出版信息

Genome Res. 2018 Sep;28(9):1255-1263. doi: 10.1101/gr.207464.116. Epub 2018 Aug 3.

Abstract

Genomics data introduce a substantial computational burden as well as data privacy and ownership issues. Data sets generated by high-throughput sequencing platforms require immense amounts of computational resources to align to reference genomes and to call and annotate genomic variants. This problem is even more pronounced if reanalysis is needed for new versions of reference genomes, which may impose high loads to existing computational infrastructures. Additionally, after the compute-intensive analyses are completed, the results are either kept in centralized repositories with access control, or distributed among stakeholders using standard file transfer protocols. This imposes two main problems: (1) Centralized servers become gatekeepers of the data, essentially acting as an unnecessary mediator between the actual data owners and data users; and (2) servers may create single points of failure both in terms of service availability and data privacy. Therefore, there is a need for secure and decentralized platforms for data distribution with user-level data governance. A new technology, blockchain, may help ameliorate some of these problems. In broad terms, the blockchain technology enables decentralized, immutable, incorruptible public ledgers. In this Perspective, we aim to introduce current developments toward using blockchain to address several problems in omics, and to provide an outlook of possible future implications of the blockchain technology to life sciences.

摘要

基因组学数据带来了大量的计算负担,以及数据隐私和所有权问题。高通量测序平台生成的数据集需要大量的计算资源来与参考基因组对齐,并对基因组变体进行调用和注释。如果需要针对参考基因组的新版本进行重新分析,那么这个问题就更加突出了,这可能会对现有计算基础设施造成很高的负担。此外,在完成计算密集型分析后,结果要么保留在具有访问控制的集中式存储库中,要么使用标准文件传输协议在利益相关者之间分发。这带来了两个主要问题:(1)集中式服务器成为数据的把关者,实际上在实际数据所有者和数据使用者之间充当了不必要的中介;(2)服务器可能会在服务可用性和数据隐私方面都成为单点故障。因此,需要有安全的、去中心化的数据分发平台,实现用户级别的数据治理。一种新技术,区块链,可能有助于缓解其中的一些问题。广义而言,区块链技术实现了去中心化、不可变、不可篡改的公共账本。在本观点中,我们旨在介绍当前利用区块链来解决组学中的几个问题的发展,并展望区块链技术对生命科学可能产生的未来影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/20d7/6120626/d966644a4cf6/1255f01.jpg

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