National Center for Irradiation Technology, Nuclear Science Research Institute, King Abdulaziz City for Science and Technology, P.O. Box 6086, Riyadh, 11442, Saudi Arabia.
Department of Chemistry, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia.
Sci Rep. 2018 Aug 28;8(1):12947. doi: 10.1038/s41598-018-31221-y.
Colorimetric aptasensors based on gold nanoparticles (AuNPs) commonly feature ssDNA probes nonspecifically adsorbed to surface gold particles. A major limitation of this versatile method is the incomplete dissociation of the adsorbed nontarget binding segments of the aptamer sequence upon target binding. This results in weak or nonexistent sensor performance by preventing the particles from aggregating when the optimized salt concentration is added. Rather than removing the nonbinding nucleotides flanking the binding region of the aptamer, proposed herein is an alternative strategy, simply introducing a centrifugation and resuspension step after target recognition that eliminates residual binding between the aptamer and the surface of the particles. The performance of two different vitamin D3 (VTD3) aptamers were tested. The method enhanced the performance of the sensor that used the higher detection limit (1 µM) aptamer by fourfold. The superiority of the proposed method became apparent in a nonworking colorimetric sensor became a highly sensitive sensor with a one nanomolar detection level and excellent discrimination against potential interfering molecules including VTD2 when the centrifugation and resuspension process was implemented. The level of VTD3 in human blood was determined colorimetrically after extraction with n-hexane. The results were in agreement with those obtained by HPLC. The proposed method could be applied to aptamers targeting small molecules with no need to reprocess the SELEX-isolated sequence by knowing the binding region and removing the flanking primers.
基于金纳米粒子(AuNPs)的比色适体传感器通常具有非特异性吸附在表面金颗粒上的 ssDNA 探针。这种多功能方法的一个主要限制是,在目标结合后,适体序列的非目标结合片段不完全解离。这导致传感器性能较弱或不存在,因为当添加优化的盐浓度时,阻止了颗粒聚集。本文提出了一种替代策略,即在目标识别后简单地引入离心和重悬步骤,而不是去除适体结合区域侧翼的非结合核苷酸,从而消除适体与颗粒表面之间的残留结合。测试了两种不同维生素 D3(VTD3)适体的性能。该方法将使用检测限较高(1µM)适体的传感器的性能提高了四倍。当实施离心和重悬过程时,该方法的优越性变得明显,即使在非工作比色传感器中,也可以将其转变为具有纳摩尔检测水平的高灵敏度传感器,并对潜在干扰分子(包括 VTD2)具有出色的区分能力。通过正己烷提取后,用比色法测定人血液中的 VTD3 水平。结果与 HPLC 获得的结果一致。该方法可应用于针对小分子的适体,无需重新处理 SELEX 分离的序列,只需了解结合区域并去除侧翼引物。