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黄瓜(Cucumis sativus L.)果实韧皮部早期发育的转录组和功能分析。

Transcriptomic and functional analysis of cucumber (Cucumis sativus L.) fruit phloem during early development.

机构信息

Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, College of Horticulture, China Agricultural University, Beijing, 100193, China.

Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA.

出版信息

Plant J. 2018 Dec;96(5):982-996. doi: 10.1111/tpj.14084. Epub 2018 Oct 17.

Abstract

The phloem of the Cucurbitaceae has long been a subject of interest due to its complex nature and the economic importance of the family. As in a limited number of other families, cucurbit phloem is bicollateral, i.e. with sieve tubes on both sides of the xylem. To date little is known about the specialized functions of the internal phloem (IP) and external phloem (EP). Here, a combination of microscopy, fluorescent dye transport analysis, micro-computed tomography, laser capture microdissection and RNA-sequencing (RNA-Seq) were used to study the functions of IP and EP in the vascular bundles (VBs) of cucumber fruit. There is one type of VB in the peduncle, but four in the fruit: peripheral (PeVB), main (MVB), carpel (CVB) and placental (PlVB). The VBs are bicollateral, except for the CVB and PlVB. Phloem mobile tracers and C applied to leaves are transported primarily in the EP, and to a lesser extent in the IP. RNA-Seq data indicate preferential gene transcription in the IP related to differentiation/development, hormone transport, RNA or protein modification/processing/transport, and nitrogen compound metabolism and transport. The EP preferentially expresses genes for stimulus/stress, defense, ion transport and secondary metabolite biosynthesis. The MVB phloem is preferentially involved in photoassimilate transport, unloading and long-distance signaling, while the PeVB plays a more substantial role in morphogenesis and/or development and defense response. CVB and PlVB transcripts are biased toward development of reproductive organs. These findings provide an integrated view of the differentiated structure and function of the vascular tissue in cucumber fruit.

摘要

葫芦科的韧皮部一直是研究的热点,因为其具有复杂的特性和该科的经济重要性。与少数其他科一样,葫芦科韧皮部是双韧的,即木质部两侧都有筛管。迄今为止,人们对内部韧皮部 (IP) 和外部韧皮部 (EP) 的特殊功能知之甚少。在这里,结合显微镜、荧光染料运输分析、微计算机断层扫描、激光捕获显微切割和 RNA 测序 (RNA-Seq) 用于研究黄瓜果实维管束 (VB) 中 IP 和 EP 的功能。花梗中有 1 种 VB,但果实中有 4 种:周围 (PeVB)、主 (MVB)、心皮 (CVB) 和胎座 (PlVB)。VB 是双韧的,除了 CVB 和 PlVB。叶部应用的韧皮部移动示踪剂和 C 主要在 EP 中运输,在 IP 中则较少。RNA-Seq 数据表明,与分化/发育、激素运输、RNA 或蛋白质修饰/加工/运输以及氮化合物代谢和运输相关的 IP 中优先转录基因。EP 优先表达与刺激/应激、防御、离子运输和次生代谢物生物合成相关的基因。MVB 韧皮部优先参与同化产物的运输、卸载和长距离信号转导,而 PeVB 在形态发生和/或发育和防御反应中发挥更重要的作用。CVB 和 PlVB 转录物偏向于生殖器官的发育。这些发现提供了黄瓜果实中血管组织分化结构和功能的综合观点。

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