Yu Zhen, Yang Guiqin, Liu Xiaoming, Wang Yueqiang, Zhuang Li, Zhou Shungui
Guangdong Key Laboratory of Agricultural Environment Pollution Integrated Control, Guangdong Institute of Eco-Environmental Science & Technology, Guangzhou, 510650 China.
2School of Environment, Guangdong Key Laboratory of Environmental Pollution and Health, Jinan University, Guangzhou, 510632 China.
Stand Genomic Sci. 2018 Oct 16;13:28. doi: 10.1186/s40793-018-0322-2. eCollection 2018.
The strain SgZ-5, belonging to the Order and the Family , was isolated from a microbial fuel cell inoculated with paddy soil. A previous work has shown that strain SgZ-5 was able to fix atmospheric nitrogen involved in plant growth promotion. Here we present the complete genome of SgZ-5, which consists of a circular chromosome and six plasmids with the total genome size of 6,834,379 bp and the average GC content of 67.55%. Genome annotations predicted 5969 protein coding and 85 RNA genes including 14 rRNA and 67 tRNA genes. By genomic analysis, we identified a complete set of genes that is potentially involved in nitrogen fixation and its regulation. This genome also harbors numerous genes that are likely responsible for phytohormones production. We anticipate that the SgZ-5 genome will contribute insights into plant growth promoting properties of strains.
菌株SgZ - 5属于 目和 科,从接种了稻田土壤的微生物燃料电池中分离得到。先前的一项研究表明,菌株SgZ - 5能够固定大气中的氮,促进植物生长。在此,我们展示了SgZ - 5的完整基因组,它由一条环状染色体和六个质粒组成,基因组总大小为6,834,379 bp,平均GC含量为67.55%。基因组注释预测有5969个蛋白质编码基因和85个RNA基因,包括14个rRNA基因和67个tRNA基因。通过基因组分析,我们鉴定出了一组可能参与固氮及其调控的完整基因。该基因组还包含许多可能负责植物激素产生的基因。我们预计,SgZ - 5基因组将有助于深入了解 菌株促进植物生长的特性。