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纳米晶体:一种基于晶体习性构建纳米粒子的网络晶体学工具。

NanoCrystal: A Web-Based Crystallographic Tool for the Construction of Nanoparticles Based on Their Crystal Habit.

机构信息

Biomedical Research Foundation , Academy of Athens , 4 Soranou Ephessiou , 11527 Athens , Greece.

Information Technologies in Medicine and Biology, Department of Informatics and Telecommunications , National and Kapodistrian University of Athens , Ilisia, 15784 Athens , Greece.

出版信息

J Chem Inf Model. 2018 Dec 24;58(12):2380-2386. doi: 10.1021/acs.jcim.8b00269. Epub 2018 Dec 13.

Abstract

Modeling of nanoparticles is an essential first step to assess their capacities for different uses such as energy storage and drug delivery. However, creating an initial starting conformation for modeling and simulation is tedious because every crystalline material grows with a different crystal habit. In this application note, we describe NanoCrystal, a novel web-based crystallographic tool that creates nanoparticle models from any crystal structure guided by their preferred equilibrium shape under standard conditions according to the Wulff morphology (crystal habit). Users can upload a cif file, define the Miller indices and their corresponding minimum surface energies according to the Wulff construction of a particular crystal, and specify the size of the nanocrystal. As a result, the nanoparticle is constructed and visualized, and the coordinates of the atoms are output to the user. NanoCrystal can be accessed at http://nanocrystal.vi-seem.edu/ .

摘要

纳米粒子建模是评估其在储能和药物输送等不同用途中能力的重要第一步。然而,为建模和模拟创建初始起始构象很繁琐,因为每种结晶材料的生长都具有不同的晶体习性。在本应用说明中,我们描述了 NanoCrystal,这是一种新颖的基于网络的晶体学工具,它根据标准条件下的平衡形状(晶体习性),根据 Wulff 形态学为任何晶体结构创建纳米粒子模型。用户可以上传 cif 文件,根据特定晶体的 Wulff 结构定义米勒指数及其相应的最小表面能,并指定纳米晶体的尺寸。结果,纳米粒子被构建并可视化,并且原子的坐标输出给用户。NanoCrystal 可在 http://nanocrystal.vi-seem.edu/ 访问。

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