• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于宏基因组转录组学的高温厌氧消化器中氢气注入对微生物活性的响应。

Microbial activity response to hydrogen injection in thermophilic anaerobic digesters revealed by genome-centric metatranscriptomics.

机构信息

Department for Sustainable Food Process, DiSTAS, Catholic University of the Sacred Heart, 29122, Piacenza, Italy.

Department of Environmental Engineering, Technical University of Denmark, 2800, Kongens Lyngby, Denmark.

出版信息

Microbiome. 2018 Oct 27;6(1):194. doi: 10.1186/s40168-018-0583-4.

DOI:10.1186/s40168-018-0583-4
PMID:30368244
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6204281/
Abstract

BACKGROUND

The expansion of renewable energy produced by windmills and photovoltaic panels has generated a considerable electricity surplus, which can be utilized in water electrolysis systems for hydrogen production. The resulting hydrogen can then be funneled to anaerobic digesters for biogas upgrading (biomethanation) purposes (power-to-methane) or to produce high value-added compounds such as short-chain fatty acids (power-to-chemicals). Genome-centric metagenomics and metatranscriptomic analyses were performed to better understand the metabolic dynamics associated with H injection in two different configurations of anaerobic digesters treating acidic wastes, specifically cheese manufacturing byproducts. These approaches revealed the key-genes involved in methanation and carbon fixation pathways at species level.

RESULTS

The biogas upgrading process in the single-stage configuration increased the CH content by 7%. The dominant methanogenic species responsible for the upregulation of the hydrogenotrophic pathway in this reactor was Methanothermobacter wolfeii UC0008. In the two-stage configuration, H injection induced an upregulation of CO fixation pathways producing short-chain fatty acids, mainly acetate and butyrate. In this configuration, the abundant species Anaerobaculum hydrogeniformans UC0046 and Defluviitoga tunisiensis UC0050 primarily upregulated genes related to electron transport chains, suggesting putative syntrophisms with hydrogen scavenger microbes. Interestingly, Tepidanaerobacter acetatoxydans UC0018 did not act as an acetate-oxidizer in either reactor configurations, and instead regulated pathways involved in acetate production and uptake. A putative syntrophic association between Coprothermobacter proteolyticus UC0011 and M. wolfeii UC0008 was proposed in the two-stage reactor. In order to support the transcriptomic findings regarding the hydrogen utilization routes, an advanced bioconversion model was adapted for the simulation of the single- and two-stage reactor setups.

CONCLUSIONS

This is the first study investigating biogas reactor metatranscriptome dynamics following hydrogen injection for biomethanation and carbon fixation to short-chain fatty acids purposes. The same microbes showed different patterns of metabolic regulation in the two reactor configurations. It was observed an effect of the specialized acidogenic reactor on the overall microbial consortium composition and activity in the two-stage digester. There were also suggested the main species responsible for methanation, short-chain fatty acids production, and electron transport chain mechanisms, in both reactor configurations.

摘要

背景

风力涡轮机和光伏电池板产生的可再生能源的扩张产生了相当多的电力过剩,可以利用水电解系统生产氢气。产生的氢气可以输送到厌氧消化器进行沼气升级(生物甲烷化)(电力到甲烷)或生产高附加值化合物,如短链脂肪酸(电力到化学品)。进行了基于基因组的宏基因组学和宏转录组学分析,以更好地了解在处理酸性废物的两种不同厌氧消化器配置中注入 H 时相关的代谢动态,特别是奶酪制造副产物。这些方法揭示了物种水平上参与甲烷化和碳固定途径的关键基因。

结果

单级配置中的沼气升级过程使 CH 含量增加了 7%。在该反应器中负责上调氢营养途径的主要产甲烷物种是 Methanothermobacter wolfeii UC0008。在两级配置中,H 注入诱导了 CO 固定途径的上调,产生了短链脂肪酸,主要是乙酸和丁酸。在这种配置中,丰富的物种 Anaerobaculum hydrogeniformans UC0046 和 Defluviitoga tunisiensis UC0050 主要上调了与电子传递链相关的基因,表明与氢清除微生物存在潜在的共生关系。有趣的是,Tepidanaerobacter acetatoxydans UC0018 在两种反应器配置中都不作为乙酸氧化菌,而是调节参与乙酸产生和摄取的途径。在两级反应器中,提出了 Coprothermobacter proteolyticus UC0011 和 M. wolfeii UC0008 之间的潜在共生关系。为了支持关于氢利用途径的转录组研究结果,采用了一种先进的生物转化模型来模拟单级和两级反应器设置。

结论

这是第一项研究,调查了用于生物甲烷化和碳固定生产短链脂肪酸的氢气注入后沼气反应器的宏转录组动力学。相同的微生物在两种反应器配置中表现出不同的代谢调节模式。观察到专门的产酸反应器对两级消化器中整体微生物群落组成和活性的影响。还提出了两种反应器配置中负责甲烷化、短链脂肪酸生产和电子传递链机制的主要物种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/705b/6204281/5ea62d2bd4b1/40168_2018_583_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/705b/6204281/cba2a11907ba/40168_2018_583_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/705b/6204281/3ecf24ed6329/40168_2018_583_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/705b/6204281/43e0dfd2fd32/40168_2018_583_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/705b/6204281/c8a193ec8074/40168_2018_583_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/705b/6204281/5ea62d2bd4b1/40168_2018_583_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/705b/6204281/cba2a11907ba/40168_2018_583_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/705b/6204281/3ecf24ed6329/40168_2018_583_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/705b/6204281/43e0dfd2fd32/40168_2018_583_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/705b/6204281/c8a193ec8074/40168_2018_583_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/705b/6204281/5ea62d2bd4b1/40168_2018_583_Fig5_HTML.jpg

相似文献

1
Microbial activity response to hydrogen injection in thermophilic anaerobic digesters revealed by genome-centric metatranscriptomics.基于宏基因组转录组学的高温厌氧消化器中氢气注入对微生物活性的响应。
Microbiome. 2018 Oct 27;6(1):194. doi: 10.1186/s40168-018-0583-4.
2
Performance and genome-centric metagenomics of thermophilic single and two-stage anaerobic digesters treating cheese wastes.处理奶酪废物的嗜热单级和两级厌氧消化器的性能和基于基因组的宏基因组学研究。
Water Res. 2018 May 1;134:181-191. doi: 10.1016/j.watres.2018.02.001. Epub 2018 Feb 7.
3
Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO methanation.将宏基因组 binning 与通量平衡分析相结合,以揭示厌氧 CO 甲烷化中的共营养关系。
Microbiome. 2022 Aug 3;10(1):117. doi: 10.1186/s40168-022-01311-1.
4
Assessment of hydrogen metabolism in commercial anaerobic digesters.商业厌氧消化器中氢代谢的评估。
Appl Microbiol Biotechnol. 2016 May;100(10):4699-710. doi: 10.1007/s00253-016-7436-5. Epub 2016 Mar 19.
5
Quantitative Metaproteomics Highlight the Metabolic Contributions of Uncultured Phylotypes in a Thermophilic Anaerobic Digester.定量宏蛋白质组学揭示了嗜热厌氧消化池中未培养微生物类型的代谢贡献。
Appl Environ Microbiol. 2016 Dec 30;83(2). doi: 10.1128/AEM.01955-16. Print 2017 Jan 15.
6
Early response of methanogenic archaea to H as evaluated by metagenomics and metatranscriptomics.通过宏基因组学和宏转录组学评估甲烷古菌对 H 的早期响应。
Microb Cell Fact. 2021 Jul 3;20(1):127. doi: 10.1186/s12934-021-01618-y.
7
Integrated biogas upgrading and hydrogen utilization in an anaerobic reactor containing enriched hydrogenotrophic methanogenic culture.在含有富集氢营养型产甲烷菌培养物的厌氧反应器中进行沼气综合升级和氢气利用。
Biotechnol Bioeng. 2012 Nov;109(11):2729-36. doi: 10.1002/bit.24557. Epub 2012 May 28.
8
Upflow anaerobic sludge blanket reactor--a review.上流式厌氧污泥床反应器——综述
Indian J Environ Health. 2001 Apr;43(2):1-82.
9
The role of endogenous and exogenous hydrogen in the microbiology of biogas production systems.内源氢和外源氢在沼气生产系统微生物学中的作用。
World J Microbiol Biotechnol. 2020 May 22;36(6):79. doi: 10.1007/s11274-020-02856-9.
10
Impact of carbon monoxide on performance and microbial community of extreme-thermophilic hydrogenotrophic methanation in horizontal rotary bioreactor.一氧化碳对水平旋转生物反应器中极端嗜热氢营养型甲烷化性能和微生物群落的影响。
Bioresour Technol. 2023 Sep;384:129248. doi: 10.1016/j.biortech.2023.129248. Epub 2023 May 27.

引用本文的文献

1
Impact of trace metal supplementation on anaerobic biological methanation under hydrogen and carbon dioxide starvation.微量金属添加对氢气和二氧化碳饥饿条件下厌氧生物甲烷化的影响。
NPJ Biofilms Microbiomes. 2025 Jan 8;11(1):7. doi: 10.1038/s41522-025-00649-2.
2
Metatranscriptomics-guided genome-scale metabolic reconstruction reveals the carbon flux and trophic interaction in methanogenic communities.元转录组学指导的基因组代谢重建揭示产甲烷群落中的碳通量和营养相互作用。
Microbiome. 2024 Jul 5;12(1):121. doi: 10.1186/s40168-024-01830-z.
3
Metatranscriptomics-guided genome-scale metabolic modeling of microbial communities.

本文引用的文献

1
Hydrogen-Fueled Microbial Pathways in Biogas Upgrading Systems Revealed by Genome-Centric Metagenomics.以基因组为中心的宏基因组学揭示了沼气升级系统中以氢为燃料的微生物途径。
Front Microbiol. 2018 May 28;9:1079. doi: 10.3389/fmicb.2018.01079. eCollection 2018.
2
Two-year microbial adaptation during hydrogen-mediated biogas upgrading process in a serial reactor configuration.在串联式反应器构型中,氢气介导的沼气升级过程中的微生物经过两年的适应。
Bioresour Technol. 2018 Sep;264:140-147. doi: 10.1016/j.biortech.2018.05.070. Epub 2018 May 19.
3
Metagenomic binning reveals the functional roles of core abundant microorganisms in twelve full-scale biogas plants.
基于宏转录组学的微生物群落基因组规模代谢建模。
Cell Rep Methods. 2023 Jan 6;3(1):100383. doi: 10.1016/j.crmeth.2022.100383. eCollection 2023 Jan 23.
4
Effect of Inoculum Microbial Diversity in Ex Situ Biomethanation of Hydrogen.接种物微生物多样性对氢气异位生物甲烷化的影响。
Bioengineering (Basel). 2022 Nov 10;9(11):678. doi: 10.3390/bioengineering9110678.
5
Early response of methanogenic archaea to H as evaluated by metagenomics and metatranscriptomics.通过宏基因组学和宏转录组学评估甲烷古菌对 H 的早期响应。
Microb Cell Fact. 2021 Jul 3;20(1):127. doi: 10.1186/s12934-021-01618-y.
6
Molecular Microbial Community Analysis as an Analysis Tool for Optimal Biogas Production.分子微生物群落分析作为优化沼气生产的分析工具
Microorganisms. 2021 May 28;9(6):1162. doi: 10.3390/microorganisms9061162.
7
Insights into Ammonia Adaptation and Methanogenic Precursor Oxidation by Genome-Centric Analysis.基于基因组分析的氨适应和产甲烷前体氧化的研究进展。
Environ Sci Technol. 2020 Oct 6;54(19):12568-12582. doi: 10.1021/acs.est.0c01945. Epub 2020 Sep 14.
8
New insights from the biogas microbiome by comprehensive genome-resolved metagenomics of nearly 1600 species originating from multiple anaerobic digesters.通过对来自多个厌氧消化器的近1600个物种进行全面的基因组解析宏基因组学,获得了沼气微生物群落的新见解。
Biotechnol Biofuels. 2020 Feb 24;13:25. doi: 10.1186/s13068-020-01679-y. eCollection 2020.
9
Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem.代谢依赖性控制厌氧消化生态系统中产甲烷过程中的微生物共营养关系。
Microbiome. 2020 Feb 15;8(1):22. doi: 10.1186/s40168-019-0780-9.
宏基因组binning 揭示了十二座全规模沼气厂中核心优势微生物的功能作用。
Water Res. 2018 Sep 1;140:123-134. doi: 10.1016/j.watres.2018.04.043. Epub 2018 Apr 20.
4
Impact of temperature and substrate concentration on degradation rates of acetate, propionate and hydrogen and their links to microbial community structure.温度和底物浓度对乙酸盐、丙酸盐和氢气降解速率的影响及其与微生物群落结构的关系。
Bioresour Technol. 2018 May;256:44-52. doi: 10.1016/j.biortech.2018.01.150. Epub 2018 Feb 2.
5
Performance and genome-centric metagenomics of thermophilic single and two-stage anaerobic digesters treating cheese wastes.处理奶酪废物的嗜热单级和两级厌氧消化器的性能和基于基因组的宏基因组学研究。
Water Res. 2018 May 1;134:181-191. doi: 10.1016/j.watres.2018.02.001. Epub 2018 Feb 7.
6
Biogas upgrading and utilization: Current status and perspectives.沼气升级与利用:现状与展望。
Biotechnol Adv. 2018 Mar-Apr;36(2):452-466. doi: 10.1016/j.biotechadv.2018.01.011. Epub 2018 Feb 3.
7
In-situ biogas upgrading process: Modeling and simulations aspects.原位沼气升级过程:建模与模拟方面。
Bioresour Technol. 2017 Dec;245(Pt A):332-341. doi: 10.1016/j.biortech.2017.08.181. Epub 2017 Sep 1.
8
A systematic methodology to extend the applicability of a bioconversion model for the simulation of various co-digestion scenarios.一种系统的方法,用于扩展生物转化模型在各种共消化情景模拟中的适用性。
Bioresour Technol. 2017 Jul;235:157-166. doi: 10.1016/j.biortech.2017.03.101. Epub 2017 Mar 21.
9
In-situ biogas upgrading in thermophilic granular UASB reactor: key factors affecting the hydrogen mass transfer rate.在嗜热颗粒 UASB 反应器中进行原位沼气升级:影响氢气传质速率的关键因素。
Bioresour Technol. 2016 Dec;221:485-491. doi: 10.1016/j.biortech.2016.09.083. Epub 2016 Sep 20.
10
Untangling the Effect of Fatty Acid Addition at Species Level Revealed Different Transcriptional Responses of the Biogas Microbial Community Members.解析脂肪酸在种水平上的添加对沼气微生物群落成员的转录响应的影响。
Environ Sci Technol. 2016 Jun 7;50(11):6079-90. doi: 10.1021/acs.est.6b00296. Epub 2016 May 18.