National and Local United Engineering Lab of Metabolic Control Fermentation Technology, Tianjin University of Science & Technology, Tianjin, 300457, People's Republic of China.
College of Biotechnology, Tianjin University of Science & Technology, No. 29, 13 Main Street, Tianjin Economic and Technological Development Area, Tianjin, 300457, People's Republic of China.
Microb Cell Fact. 2018 Nov 24;17(1):185. doi: 10.1186/s12934-018-1031-7.
Promoters are commonly used to regulate the expression of specific target genes or operons. Although a series of promoters have been developed in Corynebacterium glutamicum, more precise and unique expression patterns are needed that the current selection of promoters cannot produce. RNA-Seq technology is a powerful tool for helping us to screen out promoters with expected transcriptional strengths.
The promoter P of an aldehyde dehydrogenase coding gene from Corynebacterium glutamicum CP was identified via RNA-seq and RT-PCR as a growth-regulated promoter. Comparing with the strong constitutive promoter P, the transcriptional strength of P showed a significant decrease that from about 75 to 8% in the stationary phase. By replacing the native promoters of the aceE and gltA genes with P in the C. glutamicum ATCC 13032-derived L-valine-producing strain AN02, the relative transcriptional levels of the aceE and gltA genes decreased from 1.2 and 1.1 to 0.35 and 0.3, and the activity of their translation products decreased to 43% and 35%, respectively. After 28 h flask fermentation, the final cell density of the obtained strains, GRaceE and GRgltA, exhibited a 7-10% decrease. However, L-valine production increased by 23.9% and 27.3%, and the yield of substrate to product increased 43.8% and 62.5%, respectively. In addition, in the stationary phase, the intracellular citrate levels in GRaceE and GRgltA decreased to 27.0% and 33.6% of AN02, and their intracellular oxaloacetate levels increased to 2.7 and 3.0 times that of AN02, respectively.
The P promoter displayed a significant difference on its transcriptional strength in different cell growth phases. With using P to replace the native promoters of aceE and gltA genes, both the transcriptional levels of the aceE and gltA genes and the activity of their translation products demonstrated a significant decrease in the stationary phase. Thus, the availability of pyruvate was significantly increased for the synthesis of L-valine without any apparent irreversible negative impacts on cell growth. Use of this promoter can enhance the selectivity and control of gene expression and could serve as a useful research tool for metabolic engineering.
启动子常用于调控特定靶基因或操纵子的表达。虽然已在谷氨酸棒杆菌中开发了一系列启动子,但仍需要更精确和独特的表达模式,而目前的启动子选择无法产生这些模式。RNA-Seq 技术是一种强大的工具,可帮助我们筛选出具有预期转录强度的启动子。
通过 RNA-Seq 和 RT-PCR 从谷氨酸棒杆菌 CP 中的醛脱氢酶编码基因鉴定出启动子 P 是一种生长调控启动子。与强组成型启动子 P 相比,P 的转录强度在静止期显著下降,从约 75%降至 8%。在谷氨酸棒杆菌 ATCC 13032 衍生的 L-缬氨酸生产菌株 AN02 中,用 P 替换 aceE 和 gltA 基因的天然启动子后,aceE 和 gltA 基因的相对转录水平分别从 1.2 和 1.1 降至 0.35 和 0.3,其翻译产物的活性分别下降到 43%和 35%。经过 28 小时摇瓶发酵,获得的菌株 GRaceE 和 GRgltA 的最终细胞密度分别下降了 7-10%。然而,L-缬氨酸产量分别增加了 23.9%和 27.3%,底物到产物的产率分别增加了 43.8%和 62.5%。此外,在静止期,GRaceE 和 GRgltA 中的细胞内柠檬酸水平分别下降到 AN02 的 27.0%和 33.6%,细胞内草酰乙酸水平分别增加到 AN02 的 2.7 倍和 3.0 倍。
P 启动子在不同细胞生长阶段的转录强度上存在显著差异。使用 P 替换 aceE 和 gltA 基因的天然启动子,aceE 和 gltA 基因的转录水平及其翻译产物的活性在静止期均显著下降。因此,用于 L-缬氨酸合成的丙酮酸可用性显著增加,而对细胞生长没有明显的不可逆负面影响。使用这种启动子可以增强基因表达的选择性和可控性,并且可以作为代谢工程的有用研究工具。