Department of Computer Science and Engineering, Green University of Bangladesh, Bangladesh.
Department of Computer Science and Engineering, Varendra University, Rajshahi, Bangladesh.
Neurotoxicology. 2019 Mar;71:93-101. doi: 10.1016/j.neuro.2018.12.002. Epub 2018 Dec 17.
Welding involves exposure to fumes, gases and radiant energy that can be hazardous to human health. Welding fumes (WFs) comprise a complex mixture of metallic oxides, silicates and fluorides that may result in different health effects. Inhalation of WFs in large quantities over a long periods may pose a risk of developing neurodegenerative diseases (NDGDs), but the nature of this risk is poorly understood. To address this we performed transcriptomic analysis to identify links between WF exposure and NDGDs.
We developed quantitative frameworks to identify the gene expression relationships of WF exposure and NDGDs. We analyzed gene expression microarray data from fume-exposed tissues and NDGDs including Parkinson's disease (PD), Alzheimer's disease (AD), Lou Gehrig's disease (LGD), Epilepsy disease (ED) and multiple sclerosis disease (MSD) datasets. We constructed disease-gene relationship networks and identified dysregulated pathways, ontological pathways and protein-protein interaction sub-network using multilayer network topology and neighborhood-based benchmarking.
We observed that WF associated genes share 18, 16, 13, 19 and 19 differentially expressed genes with PD, AD, LGD, ED and MSD respectively. Gene expression dysregulation along with relationship networks, pathways and ontologic analysis indicate that WFs may be linked to the progression of these NDGDs.
Our developed network-based approach to analysis and investigate the genetic effects of welding fumes on PD, AD, LGD, ED and MSD neurodegenerative diseases could be helpful to understand the causal influences of WF exposure for the progression of the NDGDs.
焊接涉及到烟雾、气体和辐射能的暴露,这些都可能对人类健康造成危害。焊接烟尘(WFs)由金属氧化物、硅酸盐和氟化物的复杂混合物组成,可能会导致不同的健康影响。长期大量吸入 WFs 可能会增加患神经退行性疾病(NDGDs)的风险,但这种风险的性质尚不清楚。为了解决这个问题,我们进行了转录组分析,以确定 WF 暴露与 NDGDs 之间的联系。
我们开发了定量框架,以确定 WF 暴露与 NDGDs 之间的基因表达关系。我们分析了来自暴露于烟尘的组织和 NDGDs 的基因表达微阵列数据,包括帕金森病(PD)、阿尔茨海默病(AD)、卢伽雷氏病(LGD)、癫痫疾病(ED)和多发性硬化症疾病(MSD)数据集。我们构建了疾病-基因关系网络,并使用多层网络拓扑和基于邻域的基准测试,确定了失调的途径、本体论途径和蛋白质-蛋白质相互作用子网络。
我们观察到 WF 相关基因分别与 PD、AD、LGD、ED 和 MSD 共享 18、16、13、19 和 19 个差异表达基因。基因表达失调以及关系网络、途径和本体论分析表明,WFs 可能与这些 NDGDs 的进展有关。
我们开发的基于网络的方法来分析和研究焊接烟尘对 PD、AD、LGD、ED 和 MSD 神经退行性疾病的遗传影响,可能有助于理解 WF 暴露对 NDGDs 进展的因果影响。