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对麻黄连轺草根和叶进行从头转录组分析,以探讨杠柳毒苷 V 在杠柳中的生物合成途径。

De novo leaf and root transcriptome analysis to explore biosynthetic pathway of Celangulin V in Celastrus angulatus maxim.

机构信息

Department of Pharmaceutical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300072, People's Republic of China.

Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin, 300072, People's Republic of China.

出版信息

BMC Genomics. 2019 Jan 5;20(1):7. doi: 10.1186/s12864-018-5397-z.

Abstract

BACKGROUND

Celastrus angulatus Maxim is a kind of crucial and traditional insecticidal plant widely distributed in the mountains of southwest China. Celangulin V is the efficient insecticidal sesquiterpenoid of C. angulatus and widely used in pest control in China, but the low yield and discontinuous supply impeded its further popularization and application. Fortunately, the development of synthetic biology provided an opportunity for sustainable supply of Celangulin V, for which understanding its biosynthetic pathway is indispensable.

RESULTS

In this study, six cDNA libraries were prepared from leaf and root of C. angulatus before global transcriptome analyses using the BGISEQ-500 platform. A total of 104,950 unigenes were finally obtained with an average length of 1200 bp in six transcriptome databases of C. angulatus, in which 51,817 unigenes classified into 25 KOG classifications, 39,866 unigenes categorized into 55 GO functional groups, and 48,810 unigenes assigned to 135 KEGG pathways, 145 of which were putative biosynthetic genes of sesquiterpenoid and triterpenoid. 16 unigenes were speculated to be related to Celangulin V biosynthesis. De novo assembled sequences were verified by Quantitative Real-Time PCR (qRT-PCR) analysis.

CONCLUSIONS

This study is the first report on transcriptome analysis of C. angulatus, and 16 unigenes probably involved in the biosynthesis of Celangulin V were finally collected. The transcriptome data will make great contributions to research for this specific insecticidal plant and the further gene mining for biosynthesis of Celangulin V and other sesquiterpene polyol esters.

摘要

背景

杠柳是一种广泛分布于中国西南山区的重要传统杀虫植物。杠柳毒素 V 是杠柳的有效杀虫倍半萜烯,在中国被广泛用于害虫防治,但产量低且供应不连续,阻碍了其进一步的推广和应用。幸运的是,合成生物学的发展为杠柳毒素 V 的可持续供应提供了机会,而了解其生物合成途径是必不可少的。

结果

在这项研究中,从杠柳的叶和根中制备了六个 cDNA 文库,然后使用 BGISEQ-500 平台进行了全局转录组分析。最终从六个杠柳转录组数据库中获得了 104950 个 unigenes,平均长度为 1200bp,其中 51817 个 unigenes分为 25 个 KOG 分类,39866 个 unigenes分为 55 个 GO 功能组,48810 个 unigenes分为 135 个 KEGG 途径,其中 145 个被推测为倍半萜和三萜生物合成基因。推测 16 个 unigenes与杠柳毒素 V 的生物合成有关。通过定量实时 PCR(qRT-PCR)分析验证了从头组装序列。

结论

这是首次对杠柳进行转录组分析的报告,最终收集到了 16 个可能参与杠柳毒素 V 生物合成的 unigenes。该转录组数据将为研究这种特殊杀虫植物以及进一步挖掘杠柳毒素 V 和其他倍半萜多醇酯的生物合成基因做出巨大贡献。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b092/6321707/f4279783acc2/12864_2018_5397_Fig1_HTML.jpg

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