Heo Jun, Cho Ha-Young, Kim Jeong-Seon, Hong Seung-Beom, Kwon Soon-Wo, Kim Soo-Jin
Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration, Wanju-gun, Jeollabuk-do 55365, Republic of Korea.
Int J Syst Evol Microbiol. 2019 Apr;69(4):970-974. doi: 10.1099/ijsem.0.003226. Epub 2019 Jan 21.
A Gram-stain-negative, strictly aerobic, non-motile, non-spore-forming, coccoid- or short rod-shaped bacterial strain, designated SC2-6, was isolated from a dust collector of a pig farm located in Wanju-gun, Jeollabuk-do, Republic of Korea. Strain SC2-6 grew within the ranges of 10-37 °C (28-30 °C, optimally), pH 6.0-10.0 (pH 7.0-8.0, optimally) and 0-3% NaCl (w/v). The 16S rRNA gene sequence similarity of strain SC2-6 showed the highest values to Paracoccus kondratievae GBT (96.3%), Paracoccus denitrificans DSM 413 (96.3%) and Paracoccus sanguinis 5503 (96.1%). The phylogenetic tree based on the 16S rRNA gene sequences revealed that strain SC2-6 belonged to the genus Paracoccus and clustered with Paracoccus pacificus F14. The phylogenetic tree based on the rpoD gene sequences also demonstrated that strain SC2-6 fell into the clade of the genus Paracoccus. The DNA G+C content was 66.9 mol%. The major respiratory quinone was ubiquinone-10 and the major fatty acids (> 10% of the total fatty acids) were summed feature 8 (comprising C18 : 1 ω6c and/or C18 : 1 ω7c). The polar lipids were composed of diphosphatidylglycerol, phosphatidylcholine, an unidentified glycolipid, two unidentified aminolipids and two unidentified lipids. On the basis of phenotypic, phylogenetic and genomic data, strain SC2-6 was classified in the genus Paracoccus as a member of a novel species, for which the name Paracoccus suum sp. nov. is proposed. The type strain is SC2-6 (=KACC 19328=NBRC 113110).
从韩国全罗北道完州郡一个养猪场的集尘器中分离出一株革兰氏染色阴性、严格需氧、不运动、不形成芽孢、球状或短杆状的细菌菌株,命名为SC2-6。菌株SC2-6在10-37 °C(最适温度为28-30 °C)、pH 6.0-10.0(最适pH为7.0-8.0)和0-3% NaCl(w/v)范围内生长。菌株SC2-6的16S rRNA基因序列相似性与孔氏副球菌GBT(96.3%)、脱氮副球菌DSM 413(96.3%)和血副球菌5503(96.1%)的相似性最高。基于16S rRNA基因序列的系统发育树显示,菌株SC2-6属于副球菌属,并与太平洋副球菌F14聚类。基于rpoD基因序列的系统发育树也表明,菌株SC2-6属于副球菌属分支。DNA G+C含量为66.9 mol%。主要呼吸醌为泛醌-10,主要脂肪酸(占总脂肪酸的>10%)为总和特征8(包括C18 : 1 ω6c和/或C18 : 1 ω7c)。极性脂质由双磷脂酰甘油、磷脂酰胆碱、一种未鉴定的糖脂、两种未鉴定的氨基脂质和两种未鉴定的脂质组成。基于表型、系统发育和基因组数据,菌株SC2-6被归类为副球菌属的一个新物种成员,为此提出了猪副球菌新种(Paracoccus suum sp. nov.)的名称。模式菌株为SC2-6(=KACC 19328=NBRC 113110)。