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基于动态增强磁共振成像的 3D SE-DenseNet 对肝细胞癌进行分级。

Grading of hepatocellular carcinoma using 3D SE-DenseNet in dynamic enhanced MR images.

机构信息

University of Science and Technology of China, Hefei, 230026, China; Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou, 215163, China.

Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou, 215163, China.

出版信息

Comput Biol Med. 2019 Apr;107:47-57. doi: 10.1016/j.compbiomed.2019.01.026. Epub 2019 Feb 4.

Abstract

BACKGROUND

Clinical histological grading of hepatocellular carcinoma (HCC) differentiation is of great significance in clinical diagnoses, treatments, and prognoses. However, it is challenging for radiologists to evaluate HCC gradings from medical images.

PURPOSE

In this study, a novel deep neural network was developed by combining the squeeze-and-excitation networks (SENets) in a three-dimensional (3D) densely connected convolutional network (DenseNet), which is referred to as a 3D SE-DenseNet, for the classification of HCC grading using enhanced clinical magnetic resonance (MR) images obtained from two different clinical centers.

METHOD

In the proposed architecture, the SENet was added as an additional layer between the dense blocks of the 3D DenseNet, to mitigate the impact of feature redundancy. For the HCC grading task, the 3D SE-DenseNet was trained after data augmentation, and it outperformed the 3D DenseNet based on the clinical dataset.

RESULTS

The quantitative evaluations of the 3D SE-DenseNet on a two-class HCC grading task were conducted based on the dataset, which included 213 samples of the dynamic enhanced MR images. The proposed 3D SE-DenseNet demonstrated an accuracy of 83%, when compared with the 72% accuracy of the 3D DenseNet.

CONCLUSION

Owing to the advantage of useful automatic feature learning by the SE layer, the 3D SE-DenseNet can simultaneously handle useful feature enhancement and superfluous feature suppression. The quantitative experiments confirm the excellent performance of the 3D SE-DenseNet in the evaluation of the HCC grading.

摘要

背景

肝细胞癌(HCC)分化的临床组织学分级在临床诊断、治疗和预后中具有重要意义。然而,对于放射科医生来说,从医学图像中评估 HCC 分级具有挑战性。

目的

本研究通过在三维(3D)密集连接卷积网络(DenseNet)中结合挤压激励网络(SENets)开发了一种新的深度神经网络,称为 3D SE-DenseNet,用于使用来自两个不同临床中心的增强型临床磁共振(MR)图像对 HCC 分级进行分类。

方法

在所提出的架构中,SENet 作为 3D DenseNet 密集块之间的附加层添加,以减轻特征冗余的影响。对于 HCC 分级任务,在进行数据增强后训练 3D SE-DenseNet,并基于临床数据集优于 3D DenseNet。

结果

基于包括 213 个动态增强 MR 图像样本的数据集,对 3D SE-DenseNet 的 HCC 分级两分类任务进行了定量评估。与 3D DenseNet 的 72%的准确率相比,所提出的 3D SE-DenseNet 表现出 83%的准确率。

结论

由于 SE 层具有有用的自动特征学习优势,因此 3D SE-DenseNet 可以同时处理有用的特征增强和多余的特征抑制。定量实验证实了 3D SE-DenseNet 在 HCC 分级评估中的优异性能。

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