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交互式生命树 (iTOL) v4:最新更新和新发展。

Interactive Tree Of Life (iTOL) v4: recent updates and new developments.

机构信息

biobyte solutions GmbH, Bothestr 142, 69126 Heidelberg, Germany.

EMBL, Meyerhofstrasse 1, 69117 Heidelberg, Germany.

出版信息

Nucleic Acids Res. 2019 Jul 2;47(W1):W256-W259. doi: 10.1093/nar/gkz239.

Abstract

The Interactive Tree Of Life (https://itol.embl.de) is an online tool for the display, manipulation and annotation of phylogenetic and other trees. It is freely available and open to everyone. The current version introduces four new dataset types, together with numerous new features. Annotation options have been expanded and new control options added for many display elements. An interactive spreadsheet-like editor has been implemented, providing dataset creation and editing directly in the web interface. Font support has been rewritten with full support for UTF-8 character encoding throughout the user interface. Google Web Fonts are now fully supported in the tree text labels. iTOL v4 is the first tool which supports direct visualization of Qiime 2 trees and associated annotations. The user account system has been streamlined and expanded with new navigation options, and currently handles >700 000 trees from more than 40 000 individual users. Full batch access has been implemented allowing programmatic upload and export of trees and annotations.

摘要

交互式生命之树(https://itol.embl.de)是一个用于展示、操作和注释系统发生树和其他树的在线工具。它是免费提供的,对所有人开放。当前版本引入了四种新的数据集类型,以及许多新的功能。注释选项得到了扩展,并且为许多显示元素添加了新的控制选项。实现了一个交互式类似于电子表格的编辑器,可直接在网络界面中创建和编辑数据集。字体支持进行了重写,在整个用户界面中完全支持 UTF-8 字符编码。现在在树文本标签中完全支持 Google Web 字体。iTOL v4 是第一个支持直接可视化 Qiime 2 树及其相关注释的工具。用户帐户系统已经得到了简化和扩展,增加了新的导航选项,目前处理来自 40000 多个用户的超过 700000 棵树。实现了完全批处理访问,允许以编程方式上传和导出树和注释。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2a89/6602468/3d76ca7befc8/gkz239fig1.jpg

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