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丝状真菌里氏木霉 GH30-7 外切木聚糖酶 A(Xyn30A)释放还原端木二糖的作用模式。

Mode of Action of GH30-7 Reducing-End Xylose-Releasing Exoxylanase A (Xyn30A) from the Filamentous Fungus Talaromyces cellulolyticus.

机构信息

Bioconversion Group, Research Institute for Sustainable Chemistry, National Institute of Advanced Industrial Science and Technology, Hiroshima, Japan.

Polymer Chemistry Group, Research Institute for Sustainable Chemistry, National Institute of Advanced Industrial Science and Technology, Ibaraki, Japan.

出版信息

Appl Environ Microbiol. 2019 Jun 17;85(13). doi: 10.1128/AEM.00552-19. Print 2019 Jul 1.

Abstract

In this study, we characterized the mode of action of reducing-end xylose-releasing exoxylanase (Rex), which belongs to the glycoside hydrolase family 30-7 (GH30-7). GH30-7 Rex, isolated from the cellulolytic fungus (Xyn30A), exists as a dimer. The purified Xyn30A released xylose from linear xylooligosaccharides (XOSs) 3 to 6 xylose units in length with similar kinetic constants. Hydrolysis of branched, borohydride-reduced, and -nitrophenyl XOSs clarified that Xyn30A possesses a Rex activity. H nuclear magnetic resonance (H NMR) analysis of xylotriose hydrolysate indicated that Xyn30A degraded XOSs via a retaining mechanism and without recognizing an anomeric structure at the reducing end. Hydrolysis of xylan by Xyn30A revealed that the enzyme continuously liberated both xylose and two types of acidic XOSs: 2-(4--methyl-α-d-glucuronyl)-xylotriose (MeGlcAXyl) and 2-(MeGlcA)-xylobiose (MeGlcAXyl). These acidic products were also detected during hydrolysis using a mixture of MeGlcAXyl ( = 2 to 14) as the substrate. This indicates that Xyn30A can release MeGlcAXyl ( = 2 and 3) in an exo manner. Comparison of subsites in Xyn30A and GH30-7 glucuronoxylanase using homology modeling suggested that the binding of the reducing-end residue at subsite +2 was partially prevented by a Gln residue conserved in GH30-7 Rex; additionally, the Arg residue at subsite -2b, which is conserved in glucuronoxylanase, was not found in Xyn30A. Our results lead us to propose that GH30-7 Rex plays a complementary role in hydrolysis of xylan by fungal cellulolytic systems. Endo- and exo-type xylanases depolymerize xylan and play crucial roles in the assimilation of xylan in bacteria and fungi. Exoxylanases release xylose from the reducing or nonreducing ends of xylooligosaccharides; this is generated by the activity of endoxylanases. β-Xylosidase, which hydrolyzes xylose residues on the nonreducing end of a substrate, is well studied. However, the function of reducing-end xylose-releasing exoxylanases (Rex), especially in fungal cellulolytic systems, remains unclear. This study revealed the mode of xylan hydrolysis by Rex from the cellulolytic fungus (Xyn30A), which belongs to the glycoside hydrolase family 30-7 (GH30-7). A conserved residue related to Rex activity is found in the substrate-binding site of Xyn30A. These findings will enhance our understanding of the function of GH30-7 Rex in the cooperative hydrolysis of xylan by fungal enzymes.

摘要

在这项研究中,我们对属于糖苷水解酶家族 30-7(GH30-7)的还原端木糖释放外切木聚糖酶(Rex)的作用模式进行了表征。GH30-7 Rex 从纤维素真菌 (Xyn30A)中分离出来,以二聚体形式存在。纯化的 Xyn30A 从线性木低聚糖(XOS)中释放出 3 到 6 个木糖单位的木糖,具有相似的动力学常数。对支链、硼氢化还原和 -硝基苯 XOS 的水解表明,Xyn30A 具有 Rex 活性。木三糖水解产物的 H 核磁共振(H NMR)分析表明,Xyn30A 通过保留机制降解 XOS,而不识别还原端的端基结构。Xyn30A 对木聚糖的水解表明,该酶连续释放木糖和两种类型的酸性 XOS:2-(4-O-甲基-α-D-葡糖醛酸基)-木三糖(MeGlcAXyl)和 2-(MeGlcA)-木二糖(MeGlcAXyl)。在使用 MeGlcAXyl(=2 至 14)混合物作为底物进行水解时,也检测到这些酸性产物。这表明 Xyn30A 可以以外切方式释放 MeGlcAXyl(=2 和 3)。使用同源建模比较 Xyn30A 和 GH30-7 葡糖醛酸木聚糖酶中的亚基,表明在 GH30-7 Rex 中保守的 Gln 残基部分阻止了还原端残基在+2 亚基上的结合;此外,在 Xyn30A 中没有发现在葡糖醛酸木聚糖酶中保守的 -2b 亚基上的 Arg 残基。我们的研究结果表明,GH30-7 Rex 在真菌纤维素酶系统水解木聚糖中起着补充作用。内切型和外切型木聚糖酶将木聚糖解聚,并在细菌和真菌中木聚糖的同化中发挥关键作用。外切木聚糖酶从木低聚糖的还原或非还原端释放木糖;这是由内切木聚糖酶的活性产生的。β-木糖苷酶,它水解底物非还原端的木糖残基,研究得很好。然而,还原端木糖释放外切木聚糖酶(Rex)的功能,特别是在真菌纤维素酶系统中,仍然不清楚。本研究揭示了属于糖苷水解酶家族 30-7(GH30-7)的纤维素分解真菌 (Xyn30A)的 Rex 水解木聚糖的模式。在 Xyn30A 的底物结合位点中发现了与 Rex 活性相关的保守残基。这些发现将增强我们对 GH30-7 Rex 在真菌酶协同水解木聚糖中的功能的理解。

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