Information Center, West China Hospital of Sichuan university, Chengdu, 610000, Sichuan, China.
Department of Orthopaedics, West China Hospital of Sichuan University, Chengdu, 610000, Sichuan, China.
J Med Syst. 2019 Apr 23;43(6):152. doi: 10.1007/s10916-019-1289-2.
Accurate and reliable brain tumor segmentation is a critical component in cancer diagnosis. According to deep learning model, a novel brain tumor segmentation method is developed by integrating fully convolutional neural networks (FCNN) and dense micro-block difference feature (DMDF) into a unified framework so as to obtain segmentation results with appearance and spatial consistency. Firstly, we propose a local feature to describe the rotation invariant property of the texture. In order to deal with the change of rotation and scale in texture image, Fisher vector encoding method is used to analyze the texture feature, which can combine with the scale information without increasing the dimension of the local feature. The obtained local features have strong robustness to rotation and gray intensity variation. Then, the non-quantifiable local feature is fused to the FCNN to perform fine boundary segmentation. Since brain tumors occupy a small portion of the image, deconvolutional layers are designed with skip connections to obtain a high quality feature map. Compared with the traditional MRI brain tumor segmentation methods, the experimental results show that the segmentation accuracy and stability has been greatly improved. Average Dice index can be up to 90.98%. And the proposed method has very high real-time performance, where brain tumor image can segment within 1 s.
准确可靠的脑肿瘤分割是癌症诊断的关键组成部分。根据深度学习模型,将全卷积神经网络(FCNN)和密集微块差分特征(DMDF)集成到一个统一的框架中,开发了一种新的脑肿瘤分割方法,以获得具有外观和空间一致性的分割结果。首先,我们提出了一种局部特征来描述纹理的旋转不变特性。为了处理纹理图像中旋转和尺度的变化,使用 Fisher 向量编码方法对纹理特征进行分析,该方法可以在不增加局部特征维度的情况下结合尺度信息。所得到的局部特征对旋转和灰度强度变化具有很强的鲁棒性。然后,将不可量化的局部特征融合到 FCNN 中进行精细边界分割。由于脑肿瘤在图像中只占很小的一部分,因此设计了反卷积层并带有跳过连接,以获得高质量的特征图。与传统的 MRI 脑肿瘤分割方法相比,实验结果表明,分割的准确性和稳定性得到了很大的提高。平均 Dice 指数可高达 90.98%。并且该方法具有很高的实时性能,脑肿瘤图像可以在 1 秒内分割。