Spring Stefan, Sorokin Dimitry Y, Verbarg Susanne, Rohde Manfred, Woyke Tanja, Kyrpides Nikos C
Department Microorganisms, Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Winogradsky Institute of Microbiology, Research Centre of Biotechnology, Moscow, Russia.
Front Microbiol. 2019 Apr 24;10:862. doi: 10.3389/fmicb.2019.00862. eCollection 2019.
Calcifying microbial mats in hypersaline environments are important model systems for the study of the earliest ecosystems on Earth that started to appear more than three billion years ago and have been preserved in the fossil record as laminated lithified structures known as stromatolites. It is believed that sulfate-reducing bacteria play a pivotal role in the lithification process by increasing the saturation index of calcium minerals within the mat. Strain L21-Syr-AB was isolated from anoxic samples of a several centimeters-thick microbialite-forming cyanobacterial mat of a hypersaline lake on the Kiritimati Atoll (Kiribati, Central Pacific). The novel isolate was assigned to the family within the . Available 16S rRNA-based population surveys obtained from discrete layers of the mat indicate that the occurrence of a species-level clade represented by strain L21-Syr-AB is restricted to a specific layer of the suboxic zone, which is characterized by the presence of aragonitic spherulites. To elucidate a possible function of this sulfate-reducing bacterium in the mineral formation within the mat a comprehensive phenotypic characterization was combined with the results of a comparative genome analysis. Among the determined traits of strain L21-Syr-AB, several features were identified that could play a role in the precipitation of calcium carbonate: (i) the potential deacetylation of polysaccharides and consumption of substrates such as lactate and sulfate could mobilize free calcium; (ii) under conditions that favor the utilization of formate and hydrogen, the alkalinity engine within the mat is stimulated, thereby increasing the availability of carbonate; (iii) the production of extracellular polysaccharides could provide nucleation sites for calcium mineralization. In addition, our data suggest the proposal of the novel species and genus represented by the type strain L21-Syr-AB (=DSM 26903 = JCM 18662).
高盐环境中的钙化微生物垫是研究地球上最早生态系统的重要模型系统,这些生态系统在三十多亿年前开始出现,并以叠层石化结构(即叠层石)的形式保存在化石记录中。据信,硫酸盐还原菌通过提高垫子中钙矿物质的饱和指数,在石化过程中发挥关键作用。菌株L21-Syr-AB是从基里巴斯(中太平洋)圣诞岛一个高盐湖中几厘米厚的形成微生物岩的蓝藻垫的缺氧样本中分离出来的。该新分离菌株被归入某科内的某属。从垫子的离散层获得的现有基于16S rRNA的种群调查表明,以菌株L21-Syr-AB为代表的物种水平分支仅限于次氧区的特定层,该层的特征是存在文石球粒。为了阐明这种硫酸盐还原菌在垫子内矿物形成中的可能功能,将全面的表型特征与比较基因组分析结果相结合。在确定的菌株L21-Syr-AB的特征中,有几个特征可能在碳酸钙沉淀中起作用:(i)多糖的潜在脱乙酰作用以及乳酸和硫酸盐等底物的消耗可以动员游离钙;(ii)在有利于甲酸盐和氢气利用的条件下,垫子内的碱度引擎受到刺激,从而增加碳酸盐的可用性;(iii)细胞外多糖的产生可以为钙矿化提供成核位点。此外,我们的数据表明以模式菌株L21-Syr-AB(=DSM 26903 = JCM 18662)为代表的新物种和新属的提议。