Strand Center for Genomics and Personalized Medicine, Strand Life Sciences, Bellary Road, Hebbal, Bangalore, 560024, India.
Indira Gandhi Institute of Child Health, Bangalore, India.
J Neurol. 2019 Aug;266(8):1919-1926. doi: 10.1007/s00415-019-09358-1. Epub 2019 May 8.
Neurological disorders are clinically heterogeneous group of disorders and are major causes of disability and death. Several of these disorders are caused due to genetic aberration. A precise and confirmatory diagnosis in the patients in a timely manner is essential for appropriate therapeutic and management strategies. Due to the complexity of the clinical presentations across various neurological disorders, arriving at an accurate diagnosis remains a challenge.
We sequenced 1012 unrelated patients from India with suspected neurological disorders, using TruSight One panel. Genetic variations were identified using the Strand NGS software and interpreted using the StrandOmics platform.
We were able to detect mutations in 197 genes in 405 (40%) cases and 178 mutations were novel. The highest diagnostic rate was observed among patients with muscular dystrophy (64%) followed by leukodystrophy and ataxia (43%, each). In our cohort, 26% of the patients who received definitive diagnosis were primarily referred with complex neurological phenotypes with no suggestive diagnosis. In terms of mutations types, 62.8% were truncating and in addition, 13.4% were structural variants, which are also likely to cause loss of function.
In our study, we observed an improved performance of multi-gene panel testing, with an overall diagnostic yield of 40%. Furthermore, we show that NGS (next-generation sequencing)-based testing is comprehensive and can detect all types of variants including structural variants. It can be considered as a single-platform genetic test for neurological disorders that can provide a swift and definitive diagnosis in a cost-effective manner.
神经紊乱是一组临床表现差异较大的疾病,也是导致残疾和死亡的主要原因。其中一些疾病是由遗传异常引起的。及时对患者进行准确且明确的诊断对于制定适当的治疗和管理策略至关重要。由于各种神经紊乱的临床表现较为复杂,因此准确诊断仍然具有挑战性。
我们使用 TruSight One panel 对来自印度的 1012 名疑似神经紊乱的无关患者进行了测序。使用 Strand NGS 软件识别遗传变异,并使用 StrandOmics 平台进行解释。
我们能够在 405 例(40%)病例中检测到 197 个基因中的突变,其中 178 个突变是新的。在肌营养不良症患者中观察到最高的诊断率(64%),其次是白质营养不良症和共济失调(各为 43%)。在我们的队列中,26%的接受明确诊断的患者主要是因复杂的神经表型就诊,而没有明确的诊断。就突变类型而言,62.8%为截断突变,此外,还有 13.4%为结构变异,这也可能导致功能丧失。
在我们的研究中,我们观察到多基因panel 检测的性能得到了改善,总体诊断率为 40%。此外,我们表明基于 NGS(下一代测序)的检测是全面的,可以检测包括结构变异在内的所有类型的变异。它可以被视为一种用于神经紊乱的单一平台遗传检测方法,能够以具有成本效益的方式快速提供明确的诊断。