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准确测量均匀标记蛋白质中亚甲基和伯胺的偶极子/偶极子横向交叉相关弛豫 [公式:见正文]。

Accurate measurement of dipole/dipole transverse cross-correlated relaxation [Formula: see text] in methylenes and primary amines of uniformly [Formula: see text]-labeled proteins.

机构信息

Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences RAS, Str. Miklukho-Maklaya 16/10, Moscow, Russian Federation, 117997.

Moscow Institute of Physics and Technology (State University), Institutsky per., 9, Dolgoprudny, Russian Federation, 141700.

出版信息

J Biomol NMR. 2019 May;73(5):245-260. doi: 10.1007/s10858-019-00252-6. Epub 2019 May 14.

Abstract

Side chains possess a broader conformational space (compared to the backbone) and are directly affected by intra- and intermolecular interactions, hence their dynamics and the corresponding NMR relaxation data are more sensitive and informative. Nevertheless, transverse relaxation in [Formula: see text] ([Formula: see text] or [Formula: see text]) spin systems is predominantly non-measurable in uniformly [Formula: see text]-labeled proteins due to cross-correlation effects. In the present publication, we propose a number of pulse sequences for accurate and precise measurement of the dipole-dipole transverse cross-correlated relaxation rate [Formula: see text], which, similarly to [Formula: see text] measurements, provides information about the amplitudes of intramolecular dynamics. The suggested approach has allowed us to circumvent a number of obstacles that were limiting earlier applications of [Formula: see text]: (1) impossibility of transmission of the central component of the triplet of [Formula: see text] group to [Formula: see text]-acquisition via INEPT has been solved by transmission of the averaged signal of "inner" and "outer" components of the triplet; (2) direct recording of the entire triplets resulting in substantial overlap of side chain signals has been replaced by recording of individual singlets with the use of [Formula: see text]-modulated approach and constant-time evolution; (3) low sensitivity has been enhanced via proton acquisition which required special attention to a zero-quantum coherence evolution. The proposed method expands the set of "dynamics sensors" covering protein side chains and substantially improves the quality and the level of detail of experimental data describing dynamic processes in proteins and protein complexes.

摘要

侧链具有更广泛的构象空间(与主链相比),并直接受到分子内和分子间相互作用的影响,因此它们的动力学和相应的 NMR 弛豫数据更敏感和有信息。然而,由于交叉相关效应,在均一 [Formula: see text] 标记的蛋白质中,[Formula: see text]([Formula: see text] 或 [Formula: see text])自旋系统的横向弛豫主要是不可测量的。在本出版物中,我们提出了一些脉冲序列,用于准确和精确地测量偶极-偶极横向交叉相关弛豫率 [Formula: see text],类似于 [Formula: see text] 测量,它提供了关于分子内动力学幅度的信息。所提出的方法使我们能够规避一些以前 [Formula: see text] 应用的限制因素:(1)通过 INEPT 将“内”和“外”三重态组件的平均信号传输到 [Formula: see text]-采集,解决了无法将 [Formula: see text] 组的三重态中心分量传输到 [Formula: see text]-采集的问题;(2)通过使用 [Formula: see text]-调制方法和恒时演化直接记录单个单重态,从而取代了直接记录整个三重态,导致侧链信号的大量重叠;(3)通过质子采集提高了灵敏度,这需要特别注意零量子相干演化。所提出的方法扩展了覆盖蛋白质侧链的“动力学传感器”的集合,并大大提高了描述蛋白质和蛋白质复合物中动态过程的实验数据的质量和详细程度。

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