College of Food Science and Engineering, Ocean University of China, 5 Yushan Road, Qingdao 266003, China.
College of Food Science and Engineering, Ocean University of China, 5 Yushan Road, Qingdao 266003, China.
Genomics. 2020 Jan;112(1):736-748. doi: 10.1016/j.ygeno.2019.05.010. Epub 2019 May 13.
Shewanella baltica 128 is a specific spoilage organism (SSO) isolated from the refrigerated shrimp that results in shrimp spoilage. This study reported the complete genome sequencing of this strain, with the primary annotations associated with amino acid transport and metabolism (8.66%), indicating that S. baltica 128 has good potential for degrading proteins. In vitro experiments revealed Shewanella baltica 128 could adapt to the stress conditions by regulating its growth and biofilm formation. Genes that related to the spoilage-related metabolic pathways, including trimethylamine metabolism (torT), sulfur metabolism (cysM), putrescine metabolism (speC), biofilm formation (rpoS) and serine protease production (degS), were identified. Genes (LuxS, pfs, LuxR and qseC) that related to the specific QS system were also identified. Complete genome sequence of S. baltica 128 provide insights into the QS-related spoilage potential, which might provide novel information for the development of new approaches for spoilage detection and prevention based on QS target.
波罗的海希瓦氏菌 128 是一种从冷藏虾中分离出来的特定腐败菌(SSO),可导致虾类腐败。本研究报告了该菌株的全基因组测序,主要注释与氨基酸转运和代谢(8.66%)有关,表明波罗的海希瓦氏菌 128 具有很好的降解蛋白质的潜力。体外实验表明,希瓦氏菌 128 可以通过调节其生长和生物膜形成来适应应激条件。确定了与腐败相关代谢途径相关的基因,包括三甲胺代谢(torT)、硫代谢(cysM)、腐胺代谢(speC)、生物膜形成(rpoS)和丝氨酸蛋白酶产生(degS)。还鉴定了与特定 QS 系统相关的基因(LuxS、pfs、LuxR 和 qseC)。希瓦氏菌 128 的完整基因组序列深入了解了与 QS 相关的腐败潜力,这可能为基于 QS 靶标开发新的腐败检测和预防方法提供新的信息。