Comments on the model parameters in "SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models".
作者信息
Zafar Hamim, Tzen Anthony, Navin Nicholas, Chen Ken, Nakhleh Luay
机构信息
Department of Computer Science, Rice University, Houston, Texas, USA.
Department of Bioinformatics and Computational Biology, the University of Texas M.D. Anderson Cancer Center, Houston, Texas, USA.
出版信息
Genome Biol. 2019 May 16;20(1):95. doi: 10.1186/s13059-019-1692-5.
Abstract
摘要
相似文献
1
Comments on the model parameters in "SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models".
Genome Biol. 2019 May 16;20(1):95. doi: 10.1186/s13059-019-1692-5.
2
SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models.
Genome Biol. 2017 Sep 19;18(1):178. doi: 10.1186/s13059-017-1311-2.
3
Anomalous unrooted gene trees.
Syst Biol. 2013 Jul;62(4):574-90. doi: 10.1093/sysbio/syt023. Epub 2013 Apr 10.
4
Estimating species trees from unrooted gene trees.
Syst Biol. 2011 Oct;60(5):661-7. doi: 10.1093/sysbio/syr027. Epub 2011 Mar 28.
5
Estimating trees from filtered data: identifiability of models for morphological phylogenetics.
J Theor Biol. 2010 Mar 7;263(1):108-19. doi: 10.1016/j.jtbi.2009.12.001. Epub 2009 Dec 11.
6
Inferring Trees.
Methods Mol Biol. 2017;1525:349-377. doi: 10.1007/978-1-4939-6622-6_14.
7
Inferring Tumor Phylogenies from Multi-region Sequencing.
Cell Syst. 2016 Jul;3(1):12-4. doi: 10.1016/j.cels.2016.07.007.
8
Exact solutions for species tree inference from discordant gene trees.
J Bioinform Comput Biol. 2013 Oct;11(5):1342005. doi: 10.1142/S0219720013420055. Epub 2013 Oct 2.
9
Metrics on multilabeled trees: interrelationships and diameter bounds.
IEEE/ACM Trans Comput Biol Bioinform. 2011 Jul-Aug;8(4):1029-40. doi: 10.1109/TCBB.2010.122.
10
Inferring duplication episodes from unrooted gene trees.
BMC Genomics. 2018 May 8;19(Suppl 5):288. doi: 10.1186/s12864-018-4623-z.
Zotero 插件