Zong Yuanyuan, Wu Minghan, Liu Xiaoxiao, Jin Yongmei, Wang Gejiao, Li Mingshun
1State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China.
2Jilin Academy of Agricultural Sciences, Changchun, Jilin, 130033, PR China.
Int J Syst Evol Microbiol. 2019 Jul;69(7):2114-2119. doi: 10.1099/ijsem.0.003445. Epub 2019 May 17.
A yellow-coloured bacterial strain, designated ZY74, was isolated from arsenic contaminated soil (34 mg kg) sample collected in Longkou, Hubei Province, PR China. Cells were Gram-stain-negative, aerobic, non-motile and rod-shaped. Strain ZY74 produced round, yellow-pigmented, smooth and opaque colonies. Based on the results of 16S rRNA gene sequence analysis, strain ZY74 was found to be affiliated with members of the genus Chitinophaga. Its closest members were Chitinophagabarathri YLT18 (97.72 %) and Chitinophaganiabensis JS13-10 (97.17 %). The genome size of strain ZY74 was 6.61 Mb, containing 5351 predicted protein-coding genes, with a DNA G+C content of 55.0 mol%. The average nucleotide identity values of strain ZY74 with C. barathri YLT18 and C. niabensis DSM 24787 were 76.12 and 73.32 %, respectively. The digital DNA-DNA hybridization values of strain ZY74 with C. barathri YLT18 and C. niabensis JS13-10 were 20.60 and 19.40 %, respectively. The major respiratory quinone was menaquinone 7 and the predominant fatty acids (>5 %) were iso-C15:0, C16 : 1ω5c and iso-C17 : 03-OH. On the basis of phylogenetic, genotypic, phenotypic and chemotaxonomic characterization, strain ZY74 represents a novel species in the genus Chitinophaga, for which the name Chitinophagalutea sp. nov. is proposed. The type strain is ZY74 (=CCTCC AB2018369=KCTC 72039).
从中国湖北省龙口市采集的砷污染土壤(34毫克/千克)样本中分离出一株黄色细菌菌株,命名为ZY74。细胞革兰氏染色阴性,好氧,不运动,呈杆状。菌株ZY74产生圆形、黄色色素、光滑且不透明的菌落。基于16S rRNA基因序列分析结果,发现菌株ZY74属于噬几丁质杆菌属成员。其最接近的成员是巴氏噬几丁质杆菌YLT18(相似度97.72%)和尼亚宾斯噬几丁质杆菌JS13 - 10(相似度97.17%)。菌株ZY74的基因组大小为6.61兆碱基对,包含5351个预测的蛋白质编码基因,DNA G + C含量为55.0摩尔%。菌株ZY74与巴氏噬几丁质杆菌YLT18和尼亚宾斯噬几丁质杆菌DSM 24787的平均核苷酸同一性值分别为76.12%和73.32%。菌株ZY74与巴氏噬几丁质杆菌YLT18和尼亚宾斯噬几丁质杆菌JS13 - 10的数字DNA - DNA杂交值分别为20.60%和19.40%。主要呼吸醌为甲基萘醌7,主要脂肪酸(>5%)为异C15:0、C16:1ω5c和异C17:0 3 - OH。基于系统发育、基因型、表型和化学分类学特征,菌株ZY74代表噬几丁质杆菌属中的一个新物种,为此提出名为黄体噬几丁质杆菌(Chitinophaga lutea sp. nov.)。模式菌株为ZY74(=CCTCC AB2018369 = KCTC 72039)。