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黄单胞菌属一新种,从家禽羽毛废物中分离得到。

Chryseobacterium pennipullorum sp. nov., isolated from poultry feather waste.

机构信息

Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, Bloemfontein, Free State, South Africa.

Department of Food Science and Technology, Cape Peninsula University of Technology, Bellville, Western Cape, South Africa.

出版信息

Int J Syst Evol Microbiol. 2019 Aug;69(8):2380-2387. doi: 10.1099/ijsem.0.003491. Epub 2019 May 31.

Abstract

Strain 7_F195 was previously isolated from chicken feather waste collected from an abattoir in Bloemfontein, South Africa. A polyphasic approach was followed to determine if strain 7_F195 belongs to the genus Chryseobacterium and if the organism can be classified as a new species. The nearest neighbours, based on 16S rRNA gene sequence similarity values (indicated in parentheses), were Chryseobacterium flavum KCTC 12877 (98.42 %), Chryseobacterium indologenesLMG 8337 (98.24 %) and Chryseobacterium gleum ATCC 35910 (97.71 %). Genome sequencing revealed a genome size of 4 796 535 bp and a DNA G+C content of 38.6 mol%. The ANI values of strain 7_F195 compared to C. flavum, C. indologenesand C. gleum were 81.45, 81.86 and 82.38 %, respectively. The digital DNA-DNA hybridization values for strain 7_F195 with C. flavum, C. indologenes and C. gleum were 23.7, 23.7 and 24.9 %, respectively. Notable phenotypic differences include the presence of urease activity in C. indologenes LMG 8337 and C. gleum NCTC 11432, but not in strain 7_F195 or C. flavum KCTC 12877. The predominant fatty acids of strain 7_F195 were iso-C15 : 0, iso-C17 : 1ω9c and iso-C17 : 0 3-OH and the most abundant polar lipid was phosphatidylethanolamine. Menaquinone-6 was the only respiratory quinone. Based on the data generated from this polyphasic study, strain 7_F195 represents a novel Chryseobacterium species for which the name Chryseobacteriumpennipullorum sp. nov. is proposed. The type strain is 7_F195 (=LMG 30781=KCTC 62760).

摘要

7_F195 株菌先前从南非布隆方丹屠宰场收集的鸡毛废物中分离得到。采用多相分类法来确定 7_F195 株菌是否属于黄杆菌属,以及该菌是否可以归类为一个新种。根据 16S rRNA 基因序列相似性值(括号中所示),其最接近的近缘种是黄杆菌 KCTC 12877(98.42%)、吲哚金黄杆菌 LMG 8337(98.24%)和谷穗黄杆菌 ATCC 35910(97.71%)。基因组测序显示,该菌株的基因组大小为 4796535bp,GC 含量为 38.6mol%。与黄杆菌、吲哚金黄杆菌和谷穗黄杆菌相比,7_F195 株的平均核苷酸同一性(ANI)值分别为 81.45%、81.86%和 82.38%。7_F195 株与黄杆菌、吲哚金黄杆菌和谷穗黄杆菌的 DNA 杂交值分别为 23.7%、23.7%和 24.9%。显著的表型差异包括吲哚金黄杆菌 LMG 8337 和谷穗黄杆菌 NCTC 11432 存在脲酶活性,但 7_F195 株和黄杆菌 KCTC 12877 不存在。7_F195 株的主要脂肪酸为 iso-C15:0、iso-C17:1ω9c 和 iso-C17:0 3-OH,最丰富的极性脂是磷脂酰乙醇胺。menaquinone-6 是唯一的呼吸醌。基于该多相研究获得的数据,7_F195 株代表了一个新的黄杆菌种,现提议将其命名为黄杆菌 pennipullorum sp. nov.。模式菌株为 7_F195(=LMG 30781=KCTC 62760)。

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