Khan Adnan Ali, Esrafili Mehdi D, Ahmad Aziz, Hull Emily, Ahmad Rashid, Jan Saeed Ullah, Ahmad Iftikhar
Center for Computational Materials Science, University of Malakand, Chakdara, Khyber Pakhtunkhwa, Pakistan.
Department of Chemistry, University of Malakand, Chakdara, Khyber Pakhtunkhwa, Pakistan.
J Mol Model. 2019 Jun 14;25(7):189. doi: 10.1007/s00894-019-4070-z.
Quantum chemical computations were applied to investigate the characteristics of open-shell hydrogen-bonding interactions in the complexes of carbamic acid (NHCOOH, CA) with HO, HOS and HSO radicals. All the resulting complexes were studied using the MP2, B3PW91 and B3LYP computational levels and 6311++G** basis set. Geometry optimizations show that the O-H⋯O contact is stronger than N-H⋯O and S-H⋯O. The interaction energies revealed that all the radicals form stronger hydrogen bonded complexes at site-1, as confirmed by electron-density (ρ) and corresponding Laplacian (∇ρ) values obtained by atoms in molecule (AIM) analysis. Non-covalent interaction and reduced density gradient analysis support the AIM results. Natural bond orbital analysis was employed to obtain the stabilization energies (E) due to charge delocalization between the interacting units. Energy decomposition analysis suggests that, for the title complexes, the exchange energy makes a larger contribution to the total interaction energy compared to other energy terms. Graphical abstract Open-shell H-bondinginteraction between carbamic acid (NHCOOH) and HO, HOS or HSOradicals.
运用量子化学计算方法研究氨基甲酸(NHCOOH,CA)与HO、HOS和HSO自由基形成的配合物中开壳层氢键相互作用的特征。使用MP2、B3PW91和B3LYP计算水平以及6311++G**基组对所有生成的配合物进行研究。几何结构优化表明,O-H⋯O接触比N-H⋯O和S-H⋯O更强。相互作用能表明,所有自由基在位点1形成更强的氢键配合物,这通过分子中的原子(AIM)分析得到的电子密度(ρ)和相应的拉普拉斯算子(∇ρ)值得到证实。非共价相互作用和密度降低梯度分析支持AIM结果。采用自然键轨道分析来获得由于相互作用单元之间电荷离域而产生的稳定化能(E)。能量分解分析表明,对于本文研究的配合物,与其他能量项相比,交换能对总相互作用能的贡献更大。图形摘要 氨基甲酸(NHCOOH)与HO、HOS或HSO自由基之间的开壳层氢键相互作用。