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sp. nov.,分离自青藏高原碱性大甲错湖。

sp. nov., isolated from alkaline Lake Dajiaco on the Tibetan Plateau.

机构信息

Tibet Plateau Institute of Biology, Lhasa 850000, PR China.

College of Life Sciences, Nanjing Normal University, Nanjing 210046, PR China.

出版信息

Int J Syst Evol Microbiol. 2019 Nov;69(11):3420-3425. doi: 10.1099/ijsem.0.003635.

Abstract

A novel Gram-stain-negative, aerobic, non-motile and rod-shaped bacterium was isolated from Lake Dajiaco on the Tibetan Plateau. Strain DJC grew without NaCl and tolerated up to 3 % (w/v) NaCl. Growth occurred at pH 6.0-10.0 (optimum, pH 7.0-8.0) and 15-37 °C (optimum, 25-30 °C). Vitamins were not required for growth. The main polar lipids of strain DJC were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. The predominant respiratory quinone was Q-10. The major fatty acid was Cω7. Genome sequencing revealed a genome size of 4.61 Mbp and a G+C content of 62.9 mol%. Analysis of 16S rRNA sequences showed that strain DJC belonged to the genus , with the closest neighbour RCRI19 (97.5 %). DNA-DNA relatedness between strain DJC and the closest phylogenetically related strain RCRI19 was 40.8 %. Stain DJC was clearly distinguished from the type strain mentioned above through phylogenetic analysis, DNA-DNA hybridization, fatty acid composition data and a range of physiological and biochemical characteristic comparisons. Based on its phenotypic and chemotaxonomic characteristics, strain DJC could be classified as a representative of a novel species of the genus for which the name sp. nov. is proposed. The type strain is DJC (=CICC 24242=KCTC 62173).

摘要

从青藏高原的大甲错湖分离到一株革兰氏阴性、需氧、非运动和杆状的新型细菌。菌株 DJC 可以在不含 NaCl 的条件下生长,并且可以耐受高达 3%(w/v)的 NaCl。其生长的 pH 值范围为 6.0-10.0(最佳,pH 7.0-8.0),温度范围为 15-37°C(最佳,25-30°C)。生长不需要维生素。菌株 DJC 的主要极性脂是双磷脂酰甘油、磷脂酰甘油和磷脂酰乙醇胺。主要的呼吸醌是 Q-10。主要脂肪酸是 Cω7。基因组测序表明,该菌株的基因组大小为 4.61 Mbp,G+C 含量为 62.9 mol%。16S rRNA 序列分析表明,菌株 DJC 属于 属,与最接近的亲缘关系菌株 RCRI19(97.5%)最为接近。菌株 DJC 与最接近的亲缘关系菌株 RCRI19 的 DNA-DNA 同源性为 40.8%。通过系统发育分析、DNA-DNA 杂交、脂肪酸组成数据以及一系列生理生化特征比较,菌株 DJC 与上述模式菌株明显不同。基于其表型和化学分类学特征,菌株 DJC 可以被分类为 属的一个新型代表种,建议将其命名为 sp. nov.。其模式菌株为 DJC(=CICC 24242=KCTC 62173)。

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